RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781042|ref|YP_003065455.1| succinate dehydrogenase hydrophobic membrane anchor [Candidatus Liberibacter asiaticus str. psy62] (130 letters) >d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]} Length = 113 Score = 69.7 bits (171), Expect = 7e-14 Identities = 25/111 (22%), Positives = 49/111 (44%) Query: 14 GMGSAKDGTGHFIKQRFTAIANIPFIIFFIAFFIKYGDAPYEQIVSVLSNVAVASIMGLG 73 ++G FI R TAI +II+ + FF G+ YE + ++ L Sbjct: 3 ASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLA 62 Query: 74 TISISVHMQLGMQVIIEDYIHYRLLKIMFLFMNSCFVLLLIIFCLFSLLKI 124 SI +H +GM ++ DY+ L++M + +++ +I+ + + Sbjct: 63 LFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV 113 >d2apja1 c.23.10.7 (A:17-260) Putative acetylxylan esterase At4g34215 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 244 Score = 24.9 bits (53), Expect = 2.4 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 35 NIPFIIFFIAFFIKYGDAPYEQIVSV-LSNVAVASIMGLGTISISVHM 81 ++P I IA Y D E + + LSNV GL S ++H+ Sbjct: 176 SLPIIQVAIASGGGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHL 223 >d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Score = 24.9 bits (54), Expect = 2.4 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 18/64 (28%) Query: 18 AKDGTGHF--IKQRFTAIANIP------FIIFFIAFFIKYGDAPYEQIVSVLSNVAVASI 69 A DG+G + + + A+A P ++I IK G Y + V V Sbjct: 12 AADGSGDYKTVSE---AVAAAPEDSKTRYVI-----RIKAGV--YRENVDVPKKKKNIMF 61 Query: 70 MGLG 73 +G G Sbjct: 62 LGDG 65 >d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 269 Score = 24.7 bits (54), Expect = 3.0 Identities = 8/29 (27%), Positives = 15/29 (51%) Query: 84 GMQVIIEDYIHYRLLKIMFLFMNSCFVLL 112 G+Q +E++IH + ++ F F L Sbjct: 204 GLQNKVENFIHKQEKRLFTNFHRQLFCWL 232 >d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]} Length = 196 Score = 24.2 bits (52), Expect = 3.9 Identities = 3/10 (30%), Positives = 8/10 (80%) Query: 88 IIEDYIHYRL 97 ++ D++ Y+L Sbjct: 8 LVVDFLSYKL 17 >d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 172 Score = 24.1 bits (52), Expect = 4.0 Identities = 3/12 (25%), Positives = 7/12 (58%) Query: 86 QVIIEDYIHYRL 97 + + DY +R+ Sbjct: 11 EGFVVDYFTHRI 22 >d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Score = 23.7 bits (51), Expect = 5.2 Identities = 6/12 (50%), Positives = 9/12 (75%) Query: 88 IIEDYIHYRLLK 99 I+ YIHY+L + Sbjct: 12 IVMKYIHYKLSQ 23 >d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Length = 158 Score = 23.3 bits (50), Expect = 7.6 Identities = 5/18 (27%), Positives = 6/18 (33%) Query: 59 SVLSNVAVASIMGLGTIS 76 S IMG G + Sbjct: 116 SYTGAACGGVIMGFGPLG 133 >d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 219 Score = 23.2 bits (50), Expect = 8.3 Identities = 5/17 (29%), Positives = 7/17 (41%) Query: 37 PFIIFFIAFFIKYGDAP 53 P ++ F YG A Sbjct: 67 PGVLHCTTKFCDYGKAT 83 >d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Score = 23.0 bits (49), Expect = 9.3 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 72 LGTISISVHMQLGMQVIIEDYIHYRLLKIMFLFMN 106 L + S M L + I ED Y++ F MN Sbjct: 70 LASRKTSFMMALCLSSIYEDLKMYQVE---FKTMN 101 >d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Score = 23.0 bits (49), Expect = 9.4 Identities = 3/12 (25%), Positives = 9/12 (75%) Query: 86 QVIIEDYIHYRL 97 + ++ D++ Y+L Sbjct: 10 RALVADFVGYKL 21 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.337 0.149 0.436 Gapped Lambda K H 0.267 0.0659 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 486,509 Number of extensions: 21455 Number of successful extensions: 99 Number of sequences better than 10.0: 1 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 23 Length of query: 130 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 54 Effective length of database: 1,364,116 Effective search space: 73662264 Effective search space used: 73662264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 48 (22.4 bits)