HHsearch alignment for GI: 254781043 and conserved domain: COG1053

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=991.44  Aligned_cols=553  Identities=55%  Similarity=0.855  Sum_probs=523.8

Q ss_pred             EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC---CCCHHHHHHHHHHHCCCC
Q ss_conf             33231058898996899999999998898299998689885210411653425137899---999999999899845887
Q gi|254781043|r   13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT---PDSWQWHLYDTIKGSDWL   89 (611)
Q Consensus        13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~---~Ds~~~~~~Dt~~~g~~l   89 (611)
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l   81 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL   81 (562)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             53211698998784888999999996699579997236889853214565302146665456899899999998743676


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf             79999999999889999999986998132799855100146411456787656407986665426678999999873-12
Q gi|254781043|r   90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NN  168 (611)
Q Consensus        90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~g  168 (611)
T Consensus        82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~--------~rt~~~~~~tG~~ll~~L~~~~~~~~~  153 (562)
T COG1053          82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSK--------PRTCFAADKTGHELLHTLYEQLLKFSG  153 (562)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             789999999986379999999808975447876600234688888--------763225666758999999999876313


Q ss_pred             CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf             30311315652000134430124689805870899506724741576565433421064014448878875136533332
Q gi|254781043|r  169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME  248 (611)
Q Consensus       169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE  248 (611)
T Consensus       154 ~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme  233 (562)
T COG1053         154 IEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDME  233 (562)
T ss_pred             CHHHCCCEEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             11110021021223179857889999547884899814648993387447773478754557858999996598213688


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCEEHHHHHHHHHHCCCC-CCCCCEEEEEE
Q ss_conf             22328884422014304566557808983268612554--0765100475201115688998817888-88887468861
Q gi|254781043|r  249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YAPSAKDLASRDVVSRCMMMEIREGRGV-GKSKDHIHLYL  325 (611)
Q Consensus       249 f~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~~~~~el~~rd~~s~ai~~ei~~g~g~-~~~~~~v~ld~  325 (611)
T Consensus       234 ~~Q~hpt~~~~~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl  313 (562)
T COG1053         234 FVQFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDL  313 (562)
T ss_pred             CCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             62364128757642787630257985876861167212356665444578651778999998637874668775678763


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r  326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH  405 (611)
Q Consensus       326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h  405 (611)
T Consensus       314 ~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~--------~~t~i~GLfAaGe~~~~~~h  384 (562)
T COG1053         314 RHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GR--------VETKIPGLFAAGEAAGVSHH  384 (562)
T ss_pred             CCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCC-CC--------CCCCCCCEEEEEEEEECCCC
T ss_conf             3357677764074046676650698855450472032046378842274-43--------55777766863212104336


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r  406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR  485 (611)
Q Consensus       406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R  485 (611)
T Consensus       385 GanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R  462 (562)
T COG1053         385 GANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFR  462 (562)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             66568866417888887998899999997506898--4267899999999998615898889999999998607864036


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf             58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r  486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD  565 (611)
Q Consensus       486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD  565 (611)
T Consensus       463 ~~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~-----rdD  537 (562)
T COG1053         463 NEEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPE-----RDD  537 (562)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCH
T ss_conf             889999999999999977545374360554321245556289899999999999865776777546887775-----647


Q ss_pred             HHHCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf             321356999984689805999944744
Q gi|254781043|r  566 VNWRKHSLCWVDWNTGKIKLDYRPVHT  592 (611)
Q Consensus       566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~  592 (611)
T Consensus       538 ~~w~kht~~~~~~---~~~~~~~~v~~  561 (562)
T COG1053         538 ENWLKHTLASYDK---KPRLEYEPVKI  561 (562)
T ss_pred             HHHHHHHHHHCCC---CCCEEEEECCC
T ss_conf             8999999871488---67423230355