HHsearch alignment for GI: 254781043 and conserved domain: COG1053
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=991.44 Aligned_cols=553 Identities=55% Similarity=0.855 Sum_probs=523.8
Q ss_pred EEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC---CCCHHHHHHHHHHHCCCC
Q ss_conf 33231058898996899999999998898299998689885210411653425137899---999999999899845887
Q gi|254781043|r 13 YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT---PDSWQWHLYDTIKGSDWL 89 (611)
Q Consensus 13 ~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~---~Ds~~~~~~Dt~~~g~~l 89 (611)
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 53211698998784888999999996699579997236889853214565302146665456899899999998743676
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CC
Q ss_conf 79999999999889999999986998132799855100146411456787656407986665426678999999873-12
Q gi|254781043|r 90 GDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NN 168 (611)
Q Consensus 90 ~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~-~g 168 (611)
T Consensus 82 ~dqd~i~~~~~~sp~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~--------~rt~~~~~~tG~~ll~~L~~~~~~~~~ 153 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSK--------PRTCFAADKTGHELLHTLYEQLLKFSG 153 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 789999999986379999999808975447876600234688888--------763225666758999999999876313
Q ss_pred CEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCC
Q ss_conf 30311315652000134430124689805870899506724741576565433421064014448878875136533332
Q gi|254781043|r 169 AEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248 (611)
Q Consensus 169 v~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mE 248 (611)
T Consensus 154 ~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme 233 (562)
T COG1053 154 IEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDME 233 (562)
T ss_pred CHHHCCCEEHHHEECCCCCEEEEEEEECCCCCEEEEECCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 11110021021223179857889999547884899814648993387447773478754557858999996598213688
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCEEHHHHHHHHHHCCCC-CCCCCEEEEEE
Q ss_conf 22328884422014304566557808983268612554--0765100475201115688998817888-88887468861
Q gi|254781043|r 249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMER--YAPSAKDLASRDVVSRCMMMEIREGRGV-GKSKDHIHLYL 325 (611)
Q Consensus 249 f~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~--y~~~~~el~~rd~~s~ai~~ei~~g~g~-~~~~~~v~ld~ 325 (611)
T Consensus 234 ~~Q~hpt~~~~~g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl 313 (562)
T COG1053 234 FVQFHPTGLVGSGILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDL 313 (562)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 62364128757642787630257985876861167212356665444578651778999998637874668775678763
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 11798999998537999997643678654406752033100123421577158537788853322760340212203356
Q gi|254781043|r 326 NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVH 405 (611)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~h 405 (611)
T Consensus 314 ~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~--------~~t~i~GLfAaGe~~~~~~h 384 (562)
T COG1053 314 RHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GR--------VETKIPGLFAAGEAAGVSHH 384 (562)
T ss_pred CCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCC-CC--------CCCCCCCEEEEEEEEECCCC
T ss_conf 3357677764074046676650698855450472032046378842274-43--------55777766863212104336
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 64304764322222232156775566542026566764002357888631010378871368999878876650972687
Q gi|254781043|r 406 GANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFR 485 (611)
Q Consensus 406 Ganrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R 485 (611)
T Consensus 385 GanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R 462 (562)
T COG1053 385 GANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFR 462 (562)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 66568866417888887998899999997506898--4267899999999998615898889999999998607864036
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 58999999999999999984151578775458899999988889999999999996262550462353377887666880
Q gi|254781043|r 486 TQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD 565 (611)
Q Consensus 486 ~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD 565 (611)
T Consensus 463 ~~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~-----rdD 537 (562)
T COG1053 463 NEEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPE-----RDD 537 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CCH
T ss_conf 889999999999999977545374360554321245556289899999999999865776777546887775-----647
Q ss_pred HHHCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 321356999984689805999944744
Q gi|254781043|r 566 VNWRKHSLCWVDWNTGKIKLDYRPVHT 592 (611)
Q Consensus 566 ~nwl~h~~~~~~~~~g~~~~~~~Pv~~ 592 (611)
T Consensus 538 ~~w~kht~~~~~~---~~~~~~~~v~~ 561 (562)
T COG1053 538 ENWLKHTLASYDK---KPRLEYEPVKI 561 (562)
T ss_pred HHHHHHHHHHCCC---CCCEEEEECCC
T ss_conf 8999999871488---67423230355