HHsearch alignment for GI: 254781043 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.90 E-value=2.8e-08 Score=72.72 Aligned_cols=113 Identities=29% Similarity=0.416 Sum_probs=75.2
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aer----------fGG-------Q--------vldT~~IENf-------- 257 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER----------FGG-------Q--------VLDTMGIENF-------- 257 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHH----------HCC-------E--------ECCCCCHHHE--------
T ss_conf 834999868863167899998612111001565----------188-------2--------0000033330--------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
T Consensus 258 ---------------Isv~~----------------------------------teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 258 ---------------ISVPE----------------------------------TEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred ---------------ECCCC----------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf ---------------05654----------------------------------54668999999987646824553343
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 652000134430124689805870899506724741576
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
T Consensus 289 a~~l~~a~--~~~~l~ev~l~nGa--vLkaktvIlstGA 323 (520)
T COG3634 289 ASKLEPAA--VEGGLIEVELANGA--VLKARTVILATGA 323 (520)
T ss_pred HHCCEECC--CCCCCEEEEECCCC--EECCCEEEEECCC
T ss_conf 42020157--88860799954783--5113169984276