HHsearch alignment for GI: 254781043 and conserved domain: KOG2960

>KOG2960 consensus.
Probab=97.94  E-value=1.1e-05  Score=55.89  Aligned_cols=118  Identities=27%  Similarity=0.368  Sum_probs=71.8

Q ss_pred             EECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf             1058898996899999999998--89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA   94 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l   94 (611)
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL---------GGQ-------LFSAMv-----------  128 (328)
T KOG2960          76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL---------GGQ-------LFSAMV-----------  128 (328)
T ss_pred             CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC---------CCH-------HHHHHH-----------
T ss_conf             04569987786654146663036998469999700369974340---------101-------545654-----------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEEC
Q ss_conf             9999998899999999869981327998551001464114567876564079866654266789999998-731230311
Q gi|254781043|r   95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFI  173 (611)
Q Consensus        95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~  173 (611)
T Consensus       129 vRK------PAhLFL~EigvpYe--degdYVVVK------------------HAA-----LFtSTvmsk~LalPNVKLFN  177 (328)
T KOG2960         129 VRK------PAHLFLQEIGVPYE--DEGDYVVVK------------------HAA-----LFTSTVMSKVLALPNVKLFN  177 (328)
T ss_pred             HCC------HHHHHHHHHCCCCC--CCCCEEEEE------------------EHH-----HHHHHHHHHHHCCCCCEEEC
T ss_conf             247------28888887389734--678779995------------------078-----89999999986278600001


Q ss_pred             CCEEEEEEECC--CC--CCEEEE
Q ss_conf             31565200013--44--301246
Q gi|254781043|r  174 EYFALDLIINS--EG--CCVGVV  192 (611)
Q Consensus       174 ~~~~~~Li~d~--dG--~V~Gav  192 (611)
T Consensus       178 AtavEDLivk~g~~g~~rvaGVV  200 (328)
T KOG2960         178 ATAVEDLIVKPGEKGEVRVAGVV  200 (328)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf             01135550036867736887897