HHsearch alignment for GI: 254781043 and conserved domain: KOG2960
>KOG2960 consensus.
Probab=97.94 E-value=1.1e-05 Score=55.89 Aligned_cols=118 Identities=27% Similarity=0.368 Sum_probs=71.8
Q ss_pred EECEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 1058898996899999999998--89829999868988521041165342513789999999999989984588779999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDA 94 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e--~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~l 94 (611)
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL---------GGQ-------LFSAMv----------- 128 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL---------GGQ-------LFSAMV----------- 128 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC---------CCH-------HHHHHH-----------
T ss_conf 04569987786654146663036998469999700369974340---------101-------545654-----------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEEC
Q ss_conf 9999998899999999869981327998551001464114567876564079866654266789999998-731230311
Q gi|254781043|r 95 IQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFI 173 (611)
Q Consensus 95 v~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~ 173 (611)
T Consensus 129 vRK------PAhLFL~EigvpYe--degdYVVVK------------------HAA-----LFtSTvmsk~LalPNVKLFN 177 (328)
T KOG2960 129 VRK------PAHLFLQEIGVPYE--DEGDYVVVK------------------HAA-----LFTSTVMSKVLALPNVKLFN 177 (328)
T ss_pred HCC------HHHHHHHHHCCCCC--CCCCEEEEE------------------EHH-----HHHHHHHHHHHCCCCCEEEC
T ss_conf 247------28888887389734--678779995------------------078-----89999999986278600001
Q ss_pred CCEEEEEEECC--CC--CCEEEE
Q ss_conf 31565200013--44--301246
Q gi|254781043|r 174 EYFALDLIINS--EG--CCVGVV 192 (611)
Q Consensus 174 ~~~~~~Li~d~--dG--~V~Gav 192 (611)
T Consensus 178 AtavEDLivk~g~~g~~rvaGVV 200 (328)
T KOG2960 178 ATAVEDLIVKPGEKGEVRVAGVV 200 (328)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 01135550036867736887897