HHsearch alignment for GI: 254781043 and conserved domain: PRK01747
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed.
Probab=99.20 E-value=3.8e-09 Score=78.42 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=87.2
Q ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHCCCCEEEECCCCCCCCHHHHHH--------HHH---HH
Q ss_conf 058898996899999999998898299998689-885210411653425137899999999999--------899---84
Q gi|254781043|r 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-PTRSHTVAAQGGIAASLANMTPDSWQWHLY--------DTI---KG 85 (611)
Q Consensus 18 ~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~-~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~--------Dt~---~~ 85 (611)
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~--~~~~~sr~~~~a~~~a~~~~~~l~~ 334 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSK--DDNALSRFFRAAFLFARRFYDLEAL 334 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 71899893899999999999789968999479875655666731267402578--9976899999999999999998754
Q ss_pred CCCCCCHHH--HHHHH--HHHHHHHHHH-HHCCCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 588779999--99999--9889999999-986998--1327998551001464114567876564079866654266789
Q gi|254781043|r 86 SDWLGDVDA--IQYLA--MEAPQSVYEL-EHYGVP--FSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILH 158 (611)
Q Consensus 86 g~~l~d~~l--v~~~~--~~a~~~i~~L-e~~Gv~--f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~ 158 (611)
T Consensus 335 ~~~~-~~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l-~~~ea-~~~~g~~~-~~~Gl~~p~~---G~v~P~~l~~ 407 (660)
T PRK01747 335 GVAF-DHDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARAL-SAEEA-EALAGLPV-PCGGIFYPQG---GWLCPAELCR 407 (660)
T ss_pred CCCC-CCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEEC-CHHHH-HHHHCCCC-CCCCEEECCC---CEECHHHHHH
T ss_conf 6864-414675699549868899999999746994330247-99999-77529987-7783782589---7756899999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 999998731230311315652000134430124689805870899506724741576565
Q gi|254781043|r 159 TLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 159 ~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
T Consensus 408 aLl~~-a~~~i~~~~~~~V~~l~~~~-~~w~----l~~~~~~--~~~Ad~VVlA~G~~s~ 459 (660)
T PRK01747 408 ALLAA-AGQGLTIHFGHEVARLERVD-DQWQ----LDFAGGV--LASAPVVVLANGHDAT 459 (660)
T ss_pred HHHHH-CCCCEEEEECCEEEEEEECC-CEEE----EEECCCC--EEECCEEEECCCCCHH
T ss_conf 99986-47985999274478999749-8089----9968992--8614679990561011