HHsearch alignment for GI: 254781043 and conserved domain: PRK05335
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed.
Probab=97.86 E-value=2.2e-05 Score=53.82 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2276034021220335664304764322222232156775566542026566764002357888631
Q gi|254781043|r 389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFD 455 (611)
Q Consensus 389 ~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (611)
T Consensus 331 ~~~~Lf~AGQIn--Gt~G--------YeEAAAqGliAGiNAa~~~~Gk~p~~~p~~t~~GaL~~~i~ 387 (434)
T PRK05335 331 SRPNLFFAGQIT--GVEG--------YVESAASGLLAGINAARLALGKEPVVPPPTTALGALLNYIT 387 (434)
T ss_pred CCCCCEECCCCC--CCHH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 879827711336--7418--------89999988999999999966999989880318999999844