HHsearch alignment for GI: 254781043 and conserved domain: PRK05675
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1148.90 Aligned_cols=568 Identities=52% Similarity=0.875 Sum_probs=540.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998898299998689885210411653425137899-9999999998998458877999999999988999999
Q gi|254781043|r 30 LRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMT-PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYE 108 (611)
Q Consensus 30 l~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~-~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~ 108 (611)
T Consensus 1 L~AAl~~~~~G~~V~vv~K~~~~~sns~~AqGGi~aa~~~~~~~Ds~~~h~~DTl~aG~~l~d~~~V~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 95789999769918999789999878788764678764379999788999999999617756899999999989999999
Q ss_pred HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCC
Q ss_conf 99869981327998551001464114567876564079866654266789999998731230311315652000134430
Q gi|254781043|r 109 LEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188 (611)
Q Consensus 109 Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V 188 (611)
T Consensus 81 L~~~Gv~F~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~~i~~~~~~~~~~li~~~dg~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEE
T ss_conf 99769988669998771244676004556677502577623559999999999998717988999689876557479829
Q ss_pred EEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 12468980587089950672474157656543342106401444887887513653333222328884422014304566
Q gi|254781043|r 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGA 268 (611)
Q Consensus 189 ~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfhPt~~~~~~~l~~~~~ 268 (611)
T Consensus 161 ~Gv~~~d~~~g~~~~i~AkaVVLATGG~g~ly~~ttn~~~~tGDG~amA~raGA~l~dmEfiQfhPT~l~~~~~Lisea~ 240 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240 (570)
T ss_pred EEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHEEECCCCCCCCCCCCCCC
T ss_conf 99999975899789998346999169886656765699876749999999879846483171573132257873014012
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 55780898326861255407651004752011156889988178888888746886111798999998537999997643
Q gi|254781043|r 269 RGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFA 348 (611)
Q Consensus 269 rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~ 348 (611)
T Consensus 241 rgeGa~L~n~~GerFm~~~~p~~~eLa~RDvvsrai~~ei~~g~g~~~~~~~v~ld~~~~~~~~~~~~~p~~~~~~~~~~ 320 (570)
T PRK05675 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFA 320 (570)
T ss_pred CCCCCEEECCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 27866898778718752207620220230576577899998456867888768977123899999752368999999863
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 67865440675203310012342157715853778885332276034021220335664304764322222232156775
Q gi|254781043|r 349 GVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIR 428 (611)
Q Consensus 349 g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~ 428 (611)
T Consensus 321 ~iD~~~~~i~v~P~~Hy~mGGi~id~~g~~i~~d~~~~~t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~ 400 (570)
T PRK05675 321 HVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLH 400 (570)
T ss_pred CCCCCCCCEEEECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88865575675144383048876367762530366777732153354114234676656664216778889869999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 56654202656676400235788863101037887136899987887665097268758999999999999999984151
Q gi|254781043|r 429 ASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLK 508 (611)
Q Consensus 429 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~~al~~L~~l~~~~~~i~ 508 (611)
T Consensus 401 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 480 (570)
T PRK05675 401 LEKALREGIEYRDASETDIDAALARLNGLNERTGGEDVAPLRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480 (570)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876336766788766789999987543216899676999999999999845665279999999999999999998385
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEEEEEEEEC-CCCEEEEEE
Q ss_conf 5787754588999999888899999999999962625504623533778876668803213569999846-898059999
Q gi|254781043|r 509 VHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDW-NTGKIKLDY 587 (611)
Q Consensus 509 ~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h~~~~~~~-~~g~~~~~~ 587 (611)
T Consensus 481 ~~d~~~~~n~~~~~a~El~n~l~~a~~i~~aAl~R~ESRG~H~R~DyPe-----rDD~nwlkHt~~~~~~~~~~~~~~~~ 555 (570)
T PRK05675 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEHRKESRGAHAREDFED-----RDDENWLCHTLYFPGEKRVAKRAVNF 555 (570)
T ss_pred CCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 3786400054789999999999999999999971754656467877898-----88867254877816898667671131
Q ss_pred ECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 447444256755000027721679
Q gi|254781043|r 588 RPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 588 ~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 556 ~~~---------~i~~~~P~~R~y 570 (570)
T PRK05675 556 APK---------TVPAFEPKVRTY 570 (570)
T ss_pred CCC---------EEEEECCCCCCC
T ss_conf 153---------352128826889