HHsearch alignment for GI: 254781043 and conserved domain: PRK05945
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1124.34 Aligned_cols=565 Identities=44% Similarity=0.751 Sum_probs=529.8
Q ss_pred EECEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCHHCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 105889899689999999999889--829999868988521041165342513789-99999999998998458877999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G--~~V~lieK~~~~~g~s~~A~GGi~a~~~~~-~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
T Consensus 3 e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 08989999659999999999987899829999788999972688878899884379999899999999998646888899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
T Consensus 83 lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs--------~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~ 154 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHS--------HNRTCYAADKTGHAILHELVNNLRRYGVTIYD 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCC--------CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999999999986997760889888011036710--------25554568883999999999998546978994
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 31565200013443012468980587089950672474157656543342106401444887887513653333222328
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qfh 253 (611)
T Consensus 155 ~~~v~~Ll~~-dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~~~~~ttn~~~~TGdG~~ma~raGA~l~dmEfiQfh 233 (575)
T PRK05945 155 EWYVMRLILE-ENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233 (575)
T ss_pred EEEEEEEEEE-CCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf 1788889870-997899999971688389998998998999987788888899877359999999859871683687417
Q ss_pred CCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCC----CCCEEEEEECCCC
Q ss_conf 884422014304566557808983268612554076510047520111568899881788888----8874688611179
Q gi|254781043|r 254 PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGK----SKDHIHLYLNHLD 329 (611)
Q Consensus 254 Pt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~----~~~~v~ld~~~~~ 329 (611)
T Consensus 234 Pt~~~~~g~l~~e~~rg~Ga~l~n~~GerF~~~y~p~~~ela~rdv~~~ai~~ei~~grg~~~~~~~g~~~v~ld~~~~~ 313 (575)
T PRK05945 234 PTGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINLDGSAGGPFVYLDLRHMG 313 (575)
T ss_pred CCCCCCCCCEECHHHCCCCEEEECCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 64215766430053236862896379953255406200002651255799999998578767676668855897564358
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89999985379999976436786544067520331001234215771585377888533227603402122033566430
Q gi|254781043|r 330 PAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR 409 (611)
Q Consensus 330 ~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanr 409 (611)
T Consensus 314 ~e~~~~~~~~~~~~~~~~~GiD~~~~~i~v~P~~Hy~mGGi~id~~~~v~~~~----~t~I~GLyAaGE~ag~g~HGanR 389 (575)
T PRK05945 314 KEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSA----DTLVEGFFAAGECACVSVHGANR 389 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCEEECCCCEEECCC----CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89998762899999999728986556357642443763675777787682478----86556650136677567766654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 4764322222232156775566542026566764002-357888631010378871368999878876650972687589
Q gi|254781043|r 410 LGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISS-CDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQD 488 (611)
Q Consensus 410 lggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~ 488 (611)
T Consensus 390 Lggnsl~e~~VfG~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~ 468 (575)
T PRK05945 390 LGSNSLLECVVYGRRTGAAIAEYVQGR-KLPEVDEQRYLKEAQQRIQALLEQSGTIRINQLRQQFQDCMTDHCGVFRTEA 468 (575)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEECHH
T ss_conf 322028999999999999999987428-9999986788899999998875378998999999999999985068432689
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHH
Q ss_conf 99999999999999984151578775458899999988889999999999996262550462353377887666880321
Q gi|254781043|r 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568 (611)
Q Consensus 489 ~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nw 568 (611)
T Consensus 469 ~L~~al~~l~~l~~~~~~~~~~~~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~~w 543 (575)
T PRK05945 469 IMQEGLEKIQELKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGELILTSALNRQESRGAHSREDYPQ-----RDDQNF 543 (575)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCCC
T ss_conf 999999999999999984684777631017899999999999999999999871512454004867787-----757203
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 3569999846898059999447444256755000027721679
Q gi|254781043|r 569 RKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 569 l~h~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 544 lkht~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 575 (575)
T PRK05945 544 LQHTLAYYS--PAGIDIQYMPV---------VITMFEPQERKY 575 (575)
T ss_pred CCEEEEEEE--CCCCEEEEECC---------EEEEECCCCCCC
T ss_conf 145789993--89556987503---------565418806889