HHsearch alignment for GI: 254781043 and conserved domain: PRK06452
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00 E-value=0 Score=1116.06 Aligned_cols=561 Identities=44% Similarity=0.700 Sum_probs=524.8
Q ss_pred EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC--CCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 2310588989968999999999988982999986898852104116534251378--99999999999899845887799
Q gi|254781043|r 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN--MTPDSWQWHLYDTIKGSDWLGDV 92 (611)
Q Consensus 15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~--~~~Ds~~~~~~Dt~~~g~~l~d~ 92 (611)
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~d~ 82 (566)
T PRK06452 3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLVDQ 82 (566)
T ss_pred EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 68707899997499999999998779978999788999975368668206863579999989999999999854688899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r 93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF 172 (611)
Q Consensus 93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~ 172 (611)
T Consensus 83 ~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~i~~~ 154 (566)
T PRK06452 83 DAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQT--------YPRTRFVGDKTGMALLHTLYERTSGLNVDFY 154 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999899999999983998652899988443347755--------1335742887668999999999862997899
Q ss_pred CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r 173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252 (611)
Q Consensus 173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf 252 (611)
T Consensus 155 ~~~~~~~Ll~~-~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfvQf 233 (566)
T PRK06452 155 NEWFAWDLVRD-EKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMGMLYRHTTNSYINTGDGYGMALRAGVALKDPEFVQF 233 (566)
T ss_pred EEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 87899998853-98688999997689959999818899917851344325679987606999999983998579578604
Q ss_pred CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf 88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV 332 (611)
Q Consensus 253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~ 332 (611)
T Consensus 234 hPt~~~~~~~l~~e~~rg~G~~l~n~~Gerf~~~y~p~~~elaprdvv~rai~~e~~~g~g~~~--~~v~ld~~~~~~~~ 311 (566)
T PRK06452 234 HPTALYPSDILISEAARGEGAILKNNKGERFMTRYAPKKLDLAPRDIVSRAITTEIKEGRGFPG--GYVGLDLTHLGEDY 311 (566)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CEEEEEHHHCCHHH
T ss_conf 6653157883222021367507756798682021076646556187988999999986479988--63341442079999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r 333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS 412 (611)
Q Consensus 333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg 412 (611)
T Consensus 312 ~~~~~~~~~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~~~---------~t~I~GLyAaGE~ag~g~HGanRLgg 382 (566)
T PRK06452 312 IKERLALAYEAAKSFAGVDATKEMIPVRPAQHYYMGGIDVDITGR---------NPDLIGLFAAGEAACVSVHGANRLGS 382 (566)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEECCCCC---------CCCCCCCEECCCCCCCCCCCCCCCHH
T ss_conf 987636899999985399865673355366662368824676888---------67776324336755146788886414
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 432222223215677556654202656676400-2357888631010378871368999878876650972687589999
Q gi|254781043|r 413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491 (611)
Q Consensus 413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~ 491 (611)
T Consensus 383 nsl~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lq~~m~~~~gi~R~~~~L~ 462 (566)
T PRK06452 383 NSLLETLVFGRETGRAVVEFLKSETEIPSSDIDKEAEKSLDDAYKYVKSESGVHFGEILEKLRDTMWDYVGIFRDENGLK 462 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHH
T ss_conf 55899999999999999999861688897623465899887788775166888889999999999987469786589999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEE
Q ss_conf 99999999999984151578775458899999988889999999999996262550462353377887666880321356
Q gi|254781043|r 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH 571 (611)
Q Consensus 492 ~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h 571 (611)
T Consensus 463 ~al~~l~~l~e~~~~~~~~d~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~nwlk~ 537 (566)
T PRK06452 463 NAVSEIKKLREQMKSMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALNRKESRGAHYRTDYPD-----RDDQNWLKH 537 (566)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCE
T ss_conf 999999999999973734786643247899999999999999999999973410454026767799-----867403646
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 9999846898059999447444256755000027721679
Q gi|254781043|r 572 SLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 572 ~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 538 ~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y 566 (566)
T PRK06452 538 TIAYLS--GNTVEITYKPV---------KMTRWKPEARVY 566 (566)
T ss_pred EEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf 889981--99006998840---------344408967879