HHsearch alignment for GI: 254781043 and conserved domain: PRK06452

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed.
Probab=100.00  E-value=0  Score=1116.06  Aligned_cols=561  Identities=44%  Similarity=0.700  Sum_probs=524.8

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC--CCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf             2310588989968999999999988982999986898852104116534251378--99999999999899845887799
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN--MTPDSWQWHLYDTIKGSDWLGDV   92 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~--~~~Ds~~~~~~Dt~~~g~~l~d~   92 (611)
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~d~   82 (566)
T PRK06452          3 KLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLVDQ   82 (566)
T ss_pred             EEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf             68707899997499999999998779978999788999975368668206863579999989999999999854688899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             99999999889999999986998132799855100146411456787656407986665426678999999873123031
Q gi|254781043|r   93 DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFF  172 (611)
Q Consensus        93 ~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~  172 (611)
T Consensus        83 ~~v~~l~~~~~~~i~~L~~~Gv~f~r~~dG~~~~~~~gghs--------~~R~~~~~d~tG~~i~~~l~~~~~~~~i~~~  154 (566)
T PRK06452         83 DAAELLSYKSGEIVELLERWGALFNRQPDGRVALRYFGGQT--------YPRTRFVGDKTGMALLHTLYERTSGLNVDFY  154 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC--------CCEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999899999999983998652899988443347755--------1335742887668999999999862997899


Q ss_pred             CCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             13156520001344301246898058708995067247415765654334210640144488788751365333322232
Q gi|254781043|r  173 IEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF  252 (611)
Q Consensus       173 ~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l~~mEf~qf  252 (611)
T Consensus       155 ~~~~~~~Ll~~-~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g~ly~~ttn~~~~TGdG~amA~raGA~l~dmEfvQf  233 (566)
T PRK06452        155 NEWFAWDLVRD-EKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMGMLYRHTTNSYINTGDGYGMALRAGVALKDPEFVQF  233 (566)
T ss_pred             EEEEEEEEEEC-CCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
T ss_conf             87899998853-98688999997689959999818899917851344325679987606999999983998579578604


Q ss_pred             CCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
Q ss_conf             88844220143045665578089832686125540765100475201115688998817888888874688611179899
Q gi|254781043|r  253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAV  332 (611)
Q Consensus       253 hPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld~~~~~~~~  332 (611)
T Consensus       234 hPt~~~~~~~l~~e~~rg~G~~l~n~~Gerf~~~y~p~~~elaprdvv~rai~~e~~~g~g~~~--~~v~ld~~~~~~~~  311 (566)
T PRK06452        234 HPTALYPSDILISEAARGEGAILKNNKGERFMTRYAPKKLDLAPRDIVSRAITTEIKEGRGFPG--GYVGLDLTHLGEDY  311 (566)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CEEEEEHHHCCHHH
T ss_conf             6653157883222021367507756798682021076646556187988999999986479988--63341442079999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             99985379999976436786544067520331001234215771585377888533227603402122033566430476
Q gi|254781043|r  333 LQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGS  412 (611)
Q Consensus       333 l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlgg  412 (611)
T Consensus       312 ~~~~~~~~~~~~~~~~giD~~~~~ipv~P~~Hy~mGGi~id~~~~---------~t~I~GLyAaGE~ag~g~HGanRLgg  382 (566)
T PRK06452        312 IKERLALAYEAAKSFAGVDATKEMIPVRPAQHYYMGGIDVDITGR---------NPDLIGLFAAGEAACVSVHGANRLGS  382 (566)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEECCCCC---------CCCCCCCEECCCCCCCCCCCCCCCHH
T ss_conf             987636899999985399865673355366662368824676888---------67776324336755146788886414


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             432222223215677556654202656676400-2357888631010378871368999878876650972687589999
Q gi|254781043|r  413 NSLIDLVVFGRAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS  491 (611)
Q Consensus       413 nsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~R~~~~L~  491 (611)
T Consensus       383 nsl~e~~VfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lq~~m~~~~gi~R~~~~L~  462 (566)
T PRK06452        383 NSLLETLVFGRETGRAVVEFLKSETEIPSSDIDKEAEKSLDDAYKYVKSESGVHFGEILEKLRDTMWDYVGIFRDENGLK  462 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEECHHHHH
T ss_conf             55899999999999999999861688897623465899887788775166888889999999999987469786589999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHCEE
Q ss_conf             99999999999984151578775458899999988889999999999996262550462353377887666880321356
Q gi|254781043|r  492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH  571 (611)
Q Consensus       492 ~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rDD~nwl~h  571 (611)
T Consensus       463 ~al~~l~~l~e~~~~~~~~d~~~~~n~el~~~~E~~n~l~~a~~~~~aal~R~ESRG~H~R~DyPe-----~DD~nwlk~  537 (566)
T PRK06452        463 NAVSEIKKLREQMKSMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALNRKESRGAHYRTDYPD-----RDDQNWLKH  537 (566)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHCCE
T ss_conf             999999999999973734786643247899999999999999999999973410454026767799-----867403646


Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             9999846898059999447444256755000027721679
Q gi|254781043|r  572 SLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       572 ~~~~~~~~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
T Consensus       538 ~~~~~~--~~~~~~~~~pv---------~~~~~~p~~r~y  566 (566)
T PRK06452        538 TIAYLS--GNTVEITYKPV---------KMTRWKPEARVY  566 (566)
T ss_pred             EEEEEE--CCCCEEEEEEE---------EEEEECCCCCCC
T ss_conf             889981--99006998840---------344408967879