HHsearch alignment for GI: 254781043 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=98.95 E-value=7.7e-08 Score=69.87 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=48.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 58898996899999999998898299998689885210411653425137899999999999899845887799999999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~G--------Gml~---~GIP~--------------yRLP~~vl~-- 191 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLG--------GMMR---YGIPG--------------YRLPRDVLD-- 191 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC--------CEEE---CCCCC--------------CCCCHHHHH--
T ss_conf 89998977899999999997698589967678889--------8883---56875--------------447589999--
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 99889999999986998132
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSR 118 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r 118 (611)
T Consensus 192 -----~ei~~i~~~GV~~~~ 206 (560)
T PRK12771 192 -----AEIQRILDLGVEVKL 206 (560)
T ss_pred -----HHHHHHHHCCCEEEE
T ss_conf -----999999964967983