HHsearch alignment for GI: 254781043 and conserved domain: PTZ00139

>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional.
Probab=100.00  E-value=0  Score=1227.07  Aligned_cols=600  Identities=63%  Similarity=1.078  Sum_probs=575.9

Q ss_pred             CCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             00053441332310588989968999999999988982999986898852104116534251378999999999998998
Q gi|254781043|r    5 SNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK   84 (611)
Q Consensus         5 ~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~   84 (611)
T Consensus        22 ~~~~~~~~~~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlk  101 (622)
T PTZ00139         22 SRAKKPYPVIDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVK  101 (622)
T ss_pred             HHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             74045667657765879999669999999999976990899978899997489998778740678999998999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r   85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA  164 (611)
Q Consensus        85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~  164 (611)
T Consensus       102 aG~~l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~  181 (622)
T PTZ00139        102 GSDWLGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQS  181 (622)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             62687799999999998999999999779972257998781215677203466787415788757861999999999999


Q ss_pred             HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf             73123031131565200013443012468980587089950672474157656543342106401444887887513653
Q gi|254781043|r  165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL  244 (611)
Q Consensus       165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l  244 (611)
T Consensus       182 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tTn~~~~TGdG~amA~raGA~l  261 (622)
T PTZ00139        182 LQYNCNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGRAYFSCTSAHSCTGDGNAMVARAGLPA  261 (622)
T ss_pred             HHCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             86599799988999999758995999999977899099997136998778754334255689987719999999859870


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r  245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY  324 (611)
Q Consensus       245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld  324 (611)
T Consensus       262 ~dmEfiQfhPt~~~~~~~LisEa~rGeGg~Lvn~~GerFm~~y~p~~~ela~RDvvsrai~~ei~~grg~~~~~~~v~ld  341 (622)
T PTZ00139        262 EDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPKAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLQ  341 (622)
T ss_pred             CCCCHHHCCCCCCCCCCCEECHHHCCCCCEEECCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             58225310466446864031032026774766137874410037521220204689999999998557877887647864


Q ss_pred             ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             11179899999853799999764367865440675203310012342157715853778885332276034021220335
Q gi|254781043|r  325 LNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV  404 (611)
Q Consensus       325 ~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~  404 (611)
T Consensus       342 ~~~~~~e~~~~~~p~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGGi~id~~~~vl~~~~~~~~t~I~GLyAaGEva~gGv  421 (622)
T PTZ00139        342 LTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKGEVITQRNNGDDAIVPGLYAAGEAACASV  421 (622)
T ss_pred             CCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             36799999987631289999985189975674010232053367765567752630247886730468423236565775


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             66430476432222223215677556654202656676400235788863101037887136899987887665097268
Q gi|254781043|r  405 HGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVF  484 (611)
Q Consensus       405 hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~  484 (611)
T Consensus       422 HGANRLggnsLle~~VfGr~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~iM~~~~gi~  501 (622)
T PTZ00139        422 HGANRLGANSLLDIVVFGKSAANTVFELTKPGRKQPDLPANAGEASIARLDRIRHNKGDIPTAQIRLRMQKTMQKHAAVF  501 (622)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             67743677889999998999999999764258988889741789999888777505899789999999999998436879


Q ss_pred             ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             75899999999999999998415157877545889999998888999999999999626255046235337788766688
Q gi|254781043|r  485 RTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRD  564 (611)
Q Consensus       485 R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rD  564 (611)
T Consensus       502 R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~~l~~a~El~n~l~~a~~i~~aAL~R~ESRG~H~R~DyPe-----rd  576 (622)
T PTZ00139        502 RIGESLQEGVEIIEECYSDFSDVRIHDKSLVWNTDLIEALELENLLTQAMQTIEGAEARKESRGAHARDDFPE-----RD  576 (622)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC
T ss_conf             9799999999999999999961714688732136799999999999999999999874624656333888898-----86


Q ss_pred             CHHHCEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             03213569999846-898059999447444256755000027721679
Q gi|254781043|r  565 DVNWRKHSLCWVDW-NTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY  611 (611)
Q Consensus       565 D~nwl~h~~~~~~~-~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y  611 (611)
T Consensus       577 DenWlkht~~~~~~~~~g~~~~~y~pv~~~~~~--~~~~~~~p~~r~y  622 (622)
T PTZ00139        577 DKNWMKHTLAYLDDAKQGKVRLAYRPVITETLD--NEMETIPPAKRVY  622 (622)
T ss_pred             CHHHCCEEEEEECCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCC
T ss_conf             611303152784468888505885035245667--7633469978889