HHsearch alignment for GI: 254781043 and conserved domain: PTZ00139
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional.
Probab=100.00 E-value=0 Score=1227.07 Aligned_cols=600 Identities=63% Similarity=1.078 Sum_probs=575.9
Q ss_pred CCCCCCCCEEEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 00053441332310588989968999999999988982999986898852104116534251378999999999998998
Q gi|254781043|r 5 SNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIK 84 (611)
Q Consensus 5 ~~~~~~~~~~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~ 84 (611)
T Consensus 22 ~~~~~~~~~~~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS~~AqGGInaa~~~~~eDs~e~h~~DTlk 101 (622)
T PTZ00139 22 SRAKKPYPVIDHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVK 101 (622)
T ss_pred HHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 74045667657765879999669999999999976990899978899997489998778740678999998999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 45887799999999998899999999869981327998551001464114567876564079866654266789999998
Q gi|254781043|r 85 GSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA 164 (611)
Q Consensus 85 ~g~~l~d~~lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~ 164 (611)
T Consensus 102 aG~~l~d~~lv~~l~~~a~~~V~~Le~~Gv~f~r~~~G~~~~r~~Gg~s~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~ 181 (622)
T PTZ00139 102 GSDWLGDQDAIHYMCKEAPCAVSELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCCAAADRTGHAMLHTLYGQS 181 (622)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 62687799999999998999999999779972257998781215677203466787415788757861999999999999
Q ss_pred HHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 73123031131565200013443012468980587089950672474157656543342106401444887887513653
Q gi|254781043|r 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 165 ~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
T Consensus 182 ~~~~i~~~~~~~~~~ll~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tTn~~~~TGdG~amA~raGA~l 261 (622)
T PTZ00139 182 LQYNCNFFIEYFCLDLIMDEDGCCRGVVAMSIADGTIHRFRSKYTVIATGGYGRAYFSCTSAHSCTGDGNAMVARAGLPA 261 (622)
T ss_pred HHCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 86599799988999999758995999999977899099997136998778754334255689987719999999859870
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 33322232888442201430456655780898326861255407651004752011156889988178888888746886
Q gi|254781043|r 245 QDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLY 324 (611)
Q Consensus 245 ~~mEf~qfhPt~~~~~~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~~v~ld 324 (611)
T Consensus 262 ~dmEfiQfhPt~~~~~~~LisEa~rGeGg~Lvn~~GerFm~~y~p~~~ela~RDvvsrai~~ei~~grg~~~~~~~v~ld 341 (622)
T PTZ00139 262 EDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPKAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLQ 341 (622)
T ss_pred CCCCHHHCCCCCCCCCCCEECHHHCCCCCEEECCCCCCCHHCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 58225310466446864031032026774766137874410037521220204689999999998557877887647864
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 11179899999853799999764367865440675203310012342157715853778885332276034021220335
Q gi|254781043|r 325 LNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASV 404 (611)
Q Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~ 404 (611)
T Consensus 342 ~~~~~~e~~~~~~p~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGGi~id~~~~vl~~~~~~~~t~I~GLyAaGEva~gGv 421 (622)
T PTZ00139 342 LTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKGEVITQRNNGDDAIVPGLYAAGEAACASV 421 (622)
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 36799999987631289999985189975674010232053367765567752630247886730468423236565775
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 66430476432222223215677556654202656676400235788863101037887136899987887665097268
Q gi|254781043|r 405 HGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVF 484 (611)
Q Consensus 405 hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Lq~iM~~~~gi~ 484 (611)
T Consensus 422 HGANRLggnsLle~~VfGr~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~iM~~~~gi~ 501 (622)
T PTZ00139 422 HGANRLGANSLLDIVVFGKSAANTVFELTKPGRKQPDLPANAGEASIARLDRIRHNKGDIPTAQIRLRMQKTMQKHAAVF 501 (622)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 67743677889999998999999999764258988889741789999888777505899789999999999998436879
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 75899999999999999998415157877545889999998888999999999999626255046235337788766688
Q gi|254781043|r 485 RTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRD 564 (611)
Q Consensus 485 R~~~~L~~al~~L~~l~~~~~~i~~~d~~~~~n~el~~~~el~~~l~~Ae~~~~aal~R~ESRG~H~R~DyPe~~~~~rD 564 (611)
T Consensus 502 R~~~~L~~al~~l~~l~~~~~~~~~~d~~~~~n~~l~~a~El~n~l~~a~~i~~aAL~R~ESRG~H~R~DyPe-----rd 576 (622)
T PTZ00139 502 RIGESLQEGVEIIEECYSDFSDVRIHDKSLVWNTDLIEALELENLLTQAMQTIEGAEARKESRGAHARDDFPE-----RD 576 (622)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CC
T ss_conf 9799999999999999999961714688732136799999999999999999999874624656333888898-----86
Q ss_pred CHHHCEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 03213569999846-898059999447444256755000027721679
Q gi|254781043|r 565 DVNWRKHSLCWVDW-NTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 (611)
Q Consensus 565 D~nwl~h~~~~~~~-~~g~~~~~~~Pv~~~~~~~~~~~~~~~p~~R~Y 611 (611)
T Consensus 577 DenWlkht~~~~~~~~~g~~~~~y~pv~~~~~~--~~~~~~~p~~r~y 622 (622)
T PTZ00139 577 DKNWMKHTLAYLDDAKQGKVRLAYRPVITETLD--NEMETIPPAKRVY 622 (622)
T ss_pred CHHHCCEEEEEECCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCC
T ss_conf 611303152784468888505885035245667--7633469978889