HHsearch alignment for GI: 254781043 and conserved domain: TIGR00031
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.11 E-value=4.4e-06 Score=58.34 Aligned_cols=242 Identities=19% Similarity=0.253 Sum_probs=118.9
Q ss_pred EECEEEECCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCH--HCCC-CEEEE--------------------------
Q ss_conf 105889899689999999-99988982999986898852104--1165-34251--------------------------
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATL-GMAEKGFKTACITKVFPTRSHTV--AAQG-GIAAS-------------------------- 66 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi-~A~e~G~~V~lieK~~~~~g~s~--~A~G-Gi~a~-------------------------- 66 (611)
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H~YGpHIfHTd~~~v~~y~~~f~E~n~ 80 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFHQYGPHIFHTDNQEVFDYISPFFELNN 80 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCCCHHHHC
T ss_conf 95179986636779999999997099889997306658734442248874367741880354385314322322024322
Q ss_pred ------CC--C-----CCCC----------CHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHH------------
Q ss_conf ------37--8-----9999----------999999989984588-7799999999998899999999------------
Q gi|254781043|r 67 ------LA--N-----MTPD----------SWQWHLYDTIKGSDW-LGDVDAIQYLAMEAPQSVYELE------------ 110 (611)
Q Consensus 67 ------~~--~-----~~~D----------s~~~~~~Dt~~~g~~-l~d~~lv~~~~~~a~~~i~~Le------------ 110 (611)
T Consensus 81 Y~hrvGL~l~~~~~~~LPFn~~~~~~Ll~~k~a~~l~~~~~~~~~k~~~~vpl~~L~~~~~p~i~~l~~~l~~~v~~~Yt 160 (390)
T TIGR00031 81 YQHRVGLALKNNLDLTLPFNLNQLRKLLGVKDAEELENFLKARFKKFGAHVPLLELQEIADPDIQLLYQFLYRKVYKPYT 160 (390)
T ss_pred CCCCCCCCEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 45775751106775679847799998628887689999998632320461556888411685378899999998624777
Q ss_pred --HCCCCCCCCCC---CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEECCCEEEEEEECC
Q ss_conf --86998132799---8551001464114567876564079866654266789999998731-23031131565200013
Q gi|254781043|r 111 --HYGVPFSRNEA---GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLIINS 184 (611)
Q Consensus 111 --~~Gv~f~r~~~---G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gv~i~~~~~~~~Li~d~ 184 (611)
T Consensus 161 ~K~WGl~~~~~~~~v~~Rvpv~-Ls~d~~YF~-----dr~yQg~P~~GY---T~~~~kML~~Plidl~Lntc~~~~L~~~ 231 (390)
T TIGR00031 161 VKQWGLPLEEIDPEVIGRVPVV-LSEDSSYFP-----DRIYQGLPKGGY---TKLFEKMLDHPLIDLKLNTCKINLLKLK 231 (390)
T ss_pred CCCCCCCHHHCCHHHHCCEEEE-EECCCCCCC-----CCEEECCCCCCH---HHHHHHHHCCCEEEEECCCCHHHHHHHC
T ss_conf 3336788577680161635389-503688666-----524622367535---7998997409846763088745664205
Q ss_pred CCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCC----------------------CCCEECCHHHHHHHHHCC
Q ss_conf 4430124689805870899506724741576565433421----------------------064014448878875136
Q gi|254781043|r 185 EGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSAT----------------------SAHTCTGDGAGMVARAGL 242 (611)
Q Consensus 185 dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t----------------------~~~~~tGdG~~mA~~aGa 242 (611)
T Consensus 232 D~ql~----f--~~~~---~~--k~viYtG~ID~lF~YrFG~L~YRSL~f~~~r~~~~~fQ~~avvN~pD-------~~~ 293 (390)
T TIGR00031 232 DSQLF----F--ANKE---IR--KPVIYTGLIDQLFGYRFGELQYRSLKFEWERYETKKFQEYAVVNYPD-------LDV 293 (390)
T ss_pred CCEEE----E--CCCC---CC--CCEEEECCCHHHCCCEECCCCCCCCCCCHHCCCCCCCCCCCEECCCC-------CCC
T ss_conf 76255----4--3776---65--77677437320127201577652210000000340116766340567-------769
Q ss_pred C-CCCCCCCCCCCCCCCCCEEECC-CCCCCCCEEEEECCCC-CCCCCCCCCC
Q ss_conf 5-3333222328884422014304-5665578089832686-1255407651
Q gi|254781043|r 243 P-LQDMEFVQFHPTGIYGAGCLIT-EGARGEGGYLVNSKGE-RFMERYAPSA 291 (611)
Q Consensus 243 ~-l~~mEf~qfhPt~~~~~~~l~~-~~~rg~G~~l~n~~Ge-rf~~~y~~~~ 291 (611)
T Consensus 294 ~~TR~~EyK~L~~~~~~~~~T~v~~EyP---~~---~~~GdPRFnEpyYPvn 339 (390)
T TIGR00031 294 DITRIVEYKHLTPTGLESKQTIVSKEYP---GE---YKVGDPRFNEPYYPVN 339 (390)
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECC---CC---CCCCCCCCCCCCCCCC
T ss_conf 7432565443266777446747874067---56---5448885457878767