HHsearch alignment for GI: 254781043 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=94.41 E-value=0.023 Score=34.04 Aligned_cols=97 Identities=24% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCCCCEEEEEECEEEE-CCCHHHHH-------HHHHHHH-CCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCH
Q ss_conf 0005344133231058898-99689999-------9999998-8982999986898852104116534251378999999
Q gi|254781043|r 5 SNLKSSYTYVDHSYDVVVV-GAGGAGLR-------ATLGMAE-KGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75 (611)
Q Consensus 5 ~~~~~~~~~~d~~~DVlVI-G~G~AGl~-------AAi~A~e-~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~ 75 (611)
T Consensus 110 ~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv--ADIDRGGVFAsi~GTl~L----L~~~~ 183 (502)
T TIGR00313 110 KAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV--ADIDRGGVFASIYGTLKL----LPEEE 183 (502)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE--EECCCCCCHHHHHHHHHH----CCCCC
T ss_conf 999999987520288899826887100053315722478986439767999--750777432433746661----88345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 9999989984588779999999999889999999986-998
Q gi|254781043|r 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHY-GVP 115 (611)
Q Consensus 76 ~~~~~Dt~~~g~~l~d~~lv~~~~~~a~~~i~~Le~~-Gv~ 115 (611)
T Consensus 184 r~liKG~v-INkfRG~~~vL~-------~GI~~lEelTGiP 216 (502)
T TIGR00313 184 RKLIKGIV-INKFRGNVDVLE-------SGIEKLEELTGIP 216 (502)
T ss_pred CCEECEEE-ECCCCCCHHHHH-------HHHHHHHHHCCCC
T ss_conf 75003068-835468724434-------4568998854842