HHsearch alignment for GI: 254781043 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=95.10  E-value=0.025  Score=33.82  Aligned_cols=100  Identities=22%  Similarity=0.362  Sum_probs=48.2

Q ss_pred             CCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH---------HHHHHHHHHHCCCC---CCCCCC
Q ss_conf             210411653425137899999999999899845887799999999998---------89999999986998---132799
Q gi|254781043|r   54 SHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAME---------APQSVYELEHYGVP---FSRNEA  121 (611)
Q Consensus        54 g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~~~~---------a~~~i~~Le~~Gv~---f~r~~~  121 (611)
T Consensus       104 aCTL~d~~G-AVTIG-----n~ErYi~D~AL~~GWrPD~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~  177 (480)
T TIGR01318       104 ACTLNDEGG-AVTIG-----NLERYITDTALAMGWRPDLSHVKPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  177 (480)
T ss_pred             CCHHCCCCC-CEEEC-----CEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             100203888-56872-----421000088984368898877300782789977886025799987517855999747703


Q ss_pred             CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCCEEECCCEE
Q ss_conf             8551001464114567876564079866654266789999998-7312303113156
Q gi|254781043|r  122 GKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQA-LKNNAEFFIEYFA  177 (611)
Q Consensus       122 G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~-~~~gv~i~~~~~~  177 (611)
T Consensus       178 -------iGGLLt-FGI-PsFK-----Ld---K~V~~~-Rr~if~~MGi~F~Ln~Ev  216 (480)
T TIGR01318       178 -------IGGLLT-FGI-PSFK-----LD---KAVLSR-RREIFTAMGIEFKLNTEV  216 (480)
T ss_pred             -------CCCCCC-CCC-CCHH-----HH---HHHHHH-HHHHHHHCCCEEECCCEE
T ss_conf             -------076013-688-8511-----02---789999-999997589278658165