HHsearch alignment for GI: 254781043 and conserved domain: TIGR01984
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.94 E-value=0.00061 Score=44.36 Aligned_cols=165 Identities=19% Similarity=0.239 Sum_probs=87.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCCC-CCHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCC
Q ss_conf 5889899689999999999889-----82999986898852-1041165342513789999999--99998998458877
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKG-----FKTACITKVFPTRS-HTVAAQGGIAASLANMTPDSWQ--WHLYDTIKGSDWLG 90 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G-----~~V~lieK~~~~~g-~s~~A~GGi~a~~~~~~~Ds~~--~~~~Dt~~~g~~l~ 90 (611)
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~-----~---f--kD~R~~AlS~GS~~~L~~l-Gll 69 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPG-----F---F--KDARSLALSYGSKQILEKL-GLL 69 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-----C---C--CCCHHHHHHHHHHHHHHHC-CCC
T ss_conf 978885658999999998506775576158986565744246864-----2---3--5650468768999999853-863
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 9999999999889999999986-998132799855100146411456787656407986665426-----6789999998
Q gi|254781043|r 91 DVDAIQYLAMEAPQSVYELEHY-GVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGH-----AILHTLYGQA 164 (611)
Q Consensus 91 d~~lv~~~~~~a~~~i~~Le~~-Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~-----~i~~~L~~~~ 164 (611)
T Consensus 70 ----------q-Ph~W~~l~~~ratpI~~---IhVSD~g~fG~~~~~~~~-------~~~~aLGyVV~~~~~~~~L~~~l 128 (425)
T TIGR01984 70 ----------Q-PHLWPKLAPFRATPIKD---IHVSDQGHFGATELRASE-------FGLPALGYVVELADLGQALLKRL 128 (425)
T ss_pred ----------C-HHHHHHHHCCCCCCCCE---EEEEECCCEEEEEECHHH-------CCCCCCCEEEEHHHHHHHHHHHH
T ss_conf ----------3-12578860136787751---688645830013412536-------28764531421789999999998
Q ss_pred HHC-CCEEECCCEEEEEEECCCC----------CCEEEEEEEE-CCCE--EEEECCCCEEEECCCC
Q ss_conf 731-2303113156520001344----------3012468980-5870--8995067247415765
Q gi|254781043|r 165 LKN-NAEFFIEYFALDLIINSEG----------CCVGVVAWQL-ETGE--IHRFSAKLVVLATGGY 216 (611)
Q Consensus 165 ~~~-gv~i~~~~~~~~Li~d~dG----------~V~Gav~~~~-~~G~--~~~i~AkaVILATGG~ 216 (611)
T Consensus 129 ~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~-~lt~~~~rhP~~l~~~Lli~ADGGl 193 (425)
T TIGR01984 129 AKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEV-TLTDNEQRHPLQLQAKLLIAADGGL 193 (425)
T ss_pred HHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEE-EEECCCCCCCEEEEEEEEEEECCCC
T ss_conf 6256651125753211210578630005666655103578-8830887564055530889855863