HHsearch alignment for GI: 254781043 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=95.17 E-value=0.024 Score=33.89 Aligned_cols=168 Identities=23% Similarity=0.330 Sum_probs=81.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 889899689999999999889829999868988521041165342513-7899999999999899845887799999999
Q gi|254781043|r 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL-ANMTPDSWQWHLYDTIKGSDWLGDVDAIQYL 98 (611)
Q Consensus 20 VlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~-~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~~~ 98 (611)
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~---~~aKPCGGAIPLCMv~EF--~lP~----d~i-------DRRV-~kM 65 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKL---DNAKPCGGAIPLCMVDEF--DLPR----DII-------DRRV-TKM 65 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECC---CCCCCCCCCCCCCCCCHH--CCCH----HHH-------HCCC-CEE
T ss_conf 8897489741689999985031046332056---788778886441201010--3786----675-------1211-022
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHHHHHHCCCEEECCCEE
Q ss_conf 9988999999998699813279985510014641145678765640798666542667899-999987312303113156
Q gi|254781043|r 99 AMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHT-LYGQALKNNAEFFIEYFA 177 (611)
Q Consensus 99 ~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~-L~~~~~~~gv~i~~~~~~ 177 (611)
T Consensus 66 k~~SPSN~~------~d~gr~L~~~----~yIgM---------~----------RREVLDsflR~RA~~~GA~li~Glv~ 116 (401)
T TIGR02028 66 KMISPSNIA------VDIGRTLKEH----EYIGM---------V----------RREVLDSFLRERAADAGATLINGLVL 116 (401)
T ss_pred EEECCCCHH------HHHHCCCCCC----CCCCC---------H----------HHHHHHHHHHHHHHHCCCEEECCEEE
T ss_conf 421641013------3200027887----61251---------4----------57888899999998648814144457
Q ss_pred --------------EEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEECCH-HHHHHHHHCC
Q ss_conf --------------5200013443012468980587089950672474157656543342106401444-8878875136
Q gi|254781043|r 178 --------------LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGD-GAGMVARAGL 242 (611)
Q Consensus 178 --------------~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ly~~~t~~~~~tGd-G~~mA~~aGa 242 (611)
T Consensus 117 ~l~~P~~p~~~PY~lHY~~-~Dg~-~G~------~g~~~~lEVD~VIGADGANSRvAk~-----idAGDY~~AIAfQERI 183 (401)
T TIGR02028 117 KLELPADPADDPYTLHYVE-EDGK-GGA------SGTKKTLEVDAVIGADGANSRVAKE-----IDAGDYDYAIAFQERI 183 (401)
T ss_pred EECCCCCCCCCCCEEEEEE-ECCC-CCC------CCCCEEEEEEEEECCCCCCCHHHCC-----CCCCCHHHHHHHHHCC
T ss_conf 6317788877871789870-0687-587------6454068887787078752023111-----3788523444433203
Q ss_pred CCCC
Q ss_conf 5333
Q gi|254781043|r 243 PLQD 246 (611)
Q Consensus 243 ~l~~ 246 (611)
T Consensus 184 RlPd 187 (401)
T TIGR02028 184 RLPD 187 (401)
T ss_pred CCCC
T ss_conf 6870