HHsearch alignment for GI: 254781043 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.69  E-value=2.1e-15  Score=119.29  Aligned_cols=113  Identities=31%  Similarity=0.401  Sum_probs=78.3

Q ss_pred             EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r   17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ   96 (611)
Q Consensus        17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~   96 (611)
T Consensus       212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~---GGqv~--------------~t--------~----~------I-  255 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI---GGQVK--------------DT--------V----G------I-  255 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCCE--------------EC--------C----C------E-
T ss_conf             8888998967899999999997799769992487---75313--------------03--------4----6------0-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf             99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r   97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF  176 (611)
Q Consensus        97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~  176 (611)
T Consensus       256 -------------e-----------------NypG~----------~------~i~G~eL~~~~~~qa~~~gv~~~~~~~  289 (515)
T TIGR03140       256 -------------E-----------------NLISV----------P------YTTGSQLAANLEEHIKQYPIDLMENQR  289 (515)
T ss_pred             -------------E-----------------ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf             -------------0-----------------44898----------7------775799999999999974968991336


Q ss_pred             EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             652000134430124689805870899506724741576565
Q gi|254781043|r  177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
T Consensus       290 v~~i~~~-~~-~~---~v~~~~g~--~~~aktVIiATGa~~r  324 (515)
T TIGR03140       290 AKKIETE-DG-LI---VVTLESGE--VLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEECC-CC-CE---EEEECCCC--EEEECEEEECCCCCCC
T ss_conf             9999727-98-18---99987998--9993979995698735