HHsearch alignment for GI: 254781043 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.69 E-value=2.1e-15 Score=119.29 Aligned_cols=113 Identities=31% Similarity=0.401 Sum_probs=78.3
Q ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 10588989968999999999988982999986898852104116534251378999999999998998458877999999
Q gi|254781043|r 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 (611)
Q Consensus 17 ~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~lv~ 96 (611)
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~---GGqv~--------------~t--------~----~------I- 255 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI---GGQVK--------------DT--------V----G------I- 255 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCCE--------------EC--------C----C------E-
T ss_conf 8888998967899999999997799769992487---75313--------------03--------4----6------0-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCE
Q ss_conf 99998899999999869981327998551001464114567876564079866654266789999998731230311315
Q gi|254781043|r 97 YLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYF 176 (611)
Q Consensus 97 ~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~~~ 176 (611)
T Consensus 256 -------------e-----------------NypG~----------~------~i~G~eL~~~~~~qa~~~gv~~~~~~~ 289 (515)
T TIGR03140 256 -------------E-----------------NLISV----------P------YTTGSQLAANLEEHIKQYPIDLMENQR 289 (515)
T ss_pred -------------E-----------------ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf -------------0-----------------44898----------7------775799999999999974968991336
Q ss_pred EEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 652000134430124689805870899506724741576565
Q gi|254781043|r 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 177 ~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
T Consensus 290 v~~i~~~-~~-~~---~v~~~~g~--~~~aktVIiATGa~~r 324 (515)
T TIGR03140 290 AKKIETE-DG-LI---VVTLESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEECC-CC-CE---EEEECCCC--EEEECEEEECCCCCCC
T ss_conf 9999727-98-18---99987998--9993979995698735