HHsearch alignment for GI: 254781043 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.67 E-value=1.9e-15 Score=119.68 Aligned_cols=115 Identities=23% Similarity=0.348 Sum_probs=77.5
Q ss_pred EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD 93 (611)
Q Consensus 14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~ 93 (611)
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~G-Gq-------i~~-t-------------------------- 45 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-GQ-------ITI-T-------------------------- 45 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CEE-C--------------------------
T ss_conf 984472999995688999999999789967999668868-65-------563-6--------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf 99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r 94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI 173 (611)
Q Consensus 94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~ 173 (611)
T Consensus 46 ----------------------------~~Ve--NYPG~----------~------~isG~eL~~~m~~qA~~~Gve~~~ 79 (555)
T TIGR03143 46 ----------------------------SEVV--NYPGI----------L------NTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred ----------------------------CCEE--ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf ----------------------------8568--78887----------7------986899999999999977969996
Q ss_pred CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf 315652000134430124689805870899506724741576565
Q gi|254781043|r 174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218 (611)
Q Consensus 174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~ 218 (611)
T Consensus 80 ~-~V~~i~~~g--~~k~V---~t~~g---~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 80 A-EVLDVDFDG--DIKTI---KTARG---DYKTLAVLIATGASPR 115 (555)
T ss_pred E-EEEEEECCC--CCEEE---EECCC---EEEECEEEECCCCCCC
T ss_conf 5-699997379--95899---98897---8996979999999714