HHsearch alignment for GI: 254781043 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.67  E-value=1.9e-15  Score=119.68  Aligned_cols=115  Identities=23%  Similarity=0.348  Sum_probs=77.5

Q ss_pred             EEEEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf             32310588989968999999999988982999986898852104116534251378999999999998998458877999
Q gi|254781043|r   14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVD   93 (611)
Q Consensus        14 ~d~~~DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~~~~Ds~~~~~~Dt~~~g~~l~d~~   93 (611)
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~G-Gq-------i~~-t--------------------------   45 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG-GQ-------ITI-T--------------------------   45 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CC-------CEE-C--------------------------
T ss_conf             984472999995688999999999789967999668868-65-------563-6--------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_conf             99999998899999999869981327998551001464114567876564079866654266789999998731230311
Q gi|254781043|r   94 AIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFI  173 (611)
Q Consensus        94 lv~~~~~~a~~~i~~Le~~Gv~f~r~~~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~  173 (611)
T Consensus        46 ----------------------------~~Ve--NYPG~----------~------~isG~eL~~~m~~qA~~~Gve~~~   79 (555)
T TIGR03143        46 ----------------------------SEVV--NYPGI----------L------NTTGPELMQEMRQQAQDFGVKFLQ   79 (555)
T ss_pred             ----------------------------CCEE--ECCCC----------C------CCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             ----------------------------8568--78887----------7------986899999999999977969996


Q ss_pred             CCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCCCCC
Q ss_conf             315652000134430124689805870899506724741576565
Q gi|254781043|r  174 EYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR  218 (611)
Q Consensus       174 ~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG~~~  218 (611)
T Consensus        80 ~-~V~~i~~~g--~~k~V---~t~~g---~~~ak~VIIATGa~pr  115 (555)
T TIGR03143        80 A-EVLDVDFDG--DIKTI---KTARG---DYKTLAVLIATGASPR  115 (555)
T ss_pred             E-EEEEEECCC--CCEEE---EECCC---EEEECEEEECCCCCCC
T ss_conf             5-699997379--95899---98897---8996979999999714