HHsearch alignment for GI: 254781043 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.78 E-value=0.15 Score=28.80 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 234215771585377888533227603402122033566430476432222223215677556654202
Q gi|254781043|r 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436 (611)
Q Consensus 368 GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe~a~~g~hGanrlggnsl~~~~vfG~~Ag~~aa~~~~~~ 436 (611)
T Consensus 253 ~~VelDe~GyI~t--De~m~TnVpGVyAAGDV~~k~l----r----QvvTA~~dGaiAA~~aerYi~~~ 311 (555)
T TIGR03143 253 GVVELDKRGYIPT--NEDMETNVPGVYAAGDLRPKEL----R----QVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCCCCCCCEEEE--CCCCCCCCCCEEECCCCCCCCC----C----EEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 7325888971973--9997059998898834528987----7----35470875799999999999999