HHsearch alignment for GI: 254781043 and conserved domain: TIGR03467
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.04 E-value=1.3e-08 Score=74.82 Aligned_cols=57 Identities=19% Similarity=0.102 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCCCEEEECCC
Q ss_conf 266789999998731230311315652000134430124689805870899506724741576
Q gi|254781043|r 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215 (611)
Q Consensus 153 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~AkaVILATGG 215 (611)
T Consensus 207 ~~~~~~~~~~~l~~~g~~i~l~~~V~~I~~~~-~~v~~~~---~~~g~--~~~ad~VI~a~p~ 263 (430)
T TIGR03467 207 SELFPEPARRWLDSRGGEVRLGHRVRALEANA-GGIRALI---RAGGE--TLTADAVVLAVPP 263 (430)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEE---ECCCE--EEECCEEEECCCH
T ss_conf 77799999999996497677698368999979-9889999---50987--9977999989898