HHsearch alignment for GI: 254781043 and conserved domain: pfam00890
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=100.00 E-value=0 Score=513.77 Aligned_cols=381 Identities=44% Similarity=0.612 Sum_probs=315.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCEEEECCC---CCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 588989968999999999988982999986898852104116534251378---99999999999899845887799999
Q gi|254781043|r 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLAN---MTPDSWQWHLYDTIKGSDWLGDVDAI 95 (611)
Q Consensus 19 DVlVIG~G~AGl~AAi~A~e~G~~V~lieK~~~~~g~s~~A~GGi~a~~~~---~~~Ds~~~~~~Dt~~~g~~l~d~~lv 95 (611)
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~s~G~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~ 80 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGLDELADHPYV 80 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 98999886999999999997899489997899999768884523100488435157999999999999965887889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9999988999999998699813279-985510014641145678765640798666542667899999987312303113
Q gi|254781043|r 96 QYLAMEAPQSVYELEHYGVPFSRNE-AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIE 174 (611)
Q Consensus 96 ~~~~~~a~~~i~~Le~~Gv~f~r~~-~G~~~~~~~gg~~~~~~~g~~~~R~~~~~d~tG~~i~~~L~~~~~~~gv~i~~~ 174 (611)
T Consensus 81 ~~~~~~s~~~~dwl~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~ 160 (401)
T pfam00890 81 EAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATWRTPHDVADRRRGTLGTGHALLARLLEGALKRGIDFQPR 160 (401)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99998679999999983997775677871113356666665021035454455678889999999999999769989938
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCEEEEECCC-CEEEECCCCCCC---------CCCCCCCCEECCHHHHHHHHHCCCC
Q ss_conf 156520001344301246898058708995067-247415765654---------3342106401444887887513653
Q gi|254781043|r 175 YFALDLIINSEGCCVGVVAWQLETGEIHRFSAK-LVVLATGGYGRA---------YFSATSAHTCTGDGAGMVARAGLPL 244 (611)
Q Consensus 175 ~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~Ak-aVILATGG~~~l---------y~~~t~~~~~tGdG~~mA~~aGa~l 244 (611)
T Consensus 161 t~~~~Li~d-~g~V~Gv~~~~~~~g~~~~i~A~kaVIlAtGGf~~n~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGa~l 239 (401)
T pfam00890 161 HPADDLIVE-DGRVTGVVVENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGAAL 239 (401)
T ss_pred CEEEEEEEE-CCEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 696156982-8858999999678980999995106799668813448876410667653378984866999999839074
Q ss_pred CC--CCCCCCCCCCCCCC---EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 33--32223288844220---14304566557808983268612554076510047520111568899881788888887
Q gi|254781043|r 245 QD--MEFVQFHPTGIYGA---GCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKD 319 (611)
Q Consensus 245 ~~--mEf~qfhPt~~~~~---~~l~~~~~rg~G~~l~n~~Gerf~~~y~~~~~el~~rd~~s~ai~~ei~~g~g~~~~~~ 319 (611)
T Consensus 240 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~i~vn~~G~Rf~~e~-------~~~~~~~~~~~~~~~~~~----~~~ 308 (401)
T pfam00890 240 TDDLMEFVQFHPTSLPGIRLGSGLLIEALRGEGGILVNDDGRRFMNEL-------ASRDVVSRAITRNEIDEG----RGA 308 (401)
T ss_pred CCCCCHHEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEHHCC-------CCHHHHHHHHHHHHHHCC----CCC
T ss_conf 588722216646313687887630344035797899889998702203-------527299999999998536----788
Q ss_pred EEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCC
Q ss_conf 46886111-79899999853799999764367865440675203310012342157715853778885332276034021
Q gi|254781043|r 320 HIHLYLNH-LDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGE 398 (611)
Q Consensus 320 ~v~ld~~~-~~~~~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~hy~~GGi~vd~~g~v~~~~~~~~~t~i~GLyAaGe 398 (611)
T Consensus 309 ~~~l~~~~~~~~~~l~~tv~~yn~~~~~g~d~d~~~~~~~~~~~~~~T~GGl~id~~~qVld~~g----~~IpGLYAaGe 384 (401)
T pfam00890 309 HVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDENGRVLDADG----QPIPGLYAAGE 384 (401)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCEECCCEEECCCCEEECCCC----CEECCEEEECC
T ss_conf 68999489999899999999999999966898856670367654182045817981763878999----89189887116
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 22033566430476432
Q gi|254781043|r 399 AGCASVHGANRLGSNSL 415 (611)
Q Consensus 399 ~a~~g~hGanrlggnsl 415 (611)
T Consensus 385 ~a~gg~hG~~rl~g~~l 401 (401)
T pfam00890 385 VACGGVHGANRLGGNSL 401 (401)
T ss_pred CCCCCCCCCCCCHHHCC
T ss_conf 76568887675631089