HHsearch alignment for GI: 254781043 and conserved domain: pfam06039

>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.46  E-value=2.8e-06  Score=59.67  Aligned_cols=195  Identities=22%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             EEEECEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC---CCCCH-HCCCCEEEE--CCCCCC--C-CH--HH----
Q ss_conf             2310588989968999999999988--9829999868988---52104-116534251--378999--9-99--99----
Q gi|254781043|r   15 DHSYDVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPT---RSHTV-AAQGGIAAS--LANMTP--D-SW--QW----   77 (611)
Q Consensus        15 d~~~DVlVIG~G~AGl~AAi~A~e~--G~~V~lieK~~~~---~g~s~-~A~GGi~a~--~~~~~~--D-s~--~~----   77 (611)
T Consensus         2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~I   81 (489)
T pfam06039         2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKI   81 (489)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             96102999996288999999999759987489998147525550788665521000213414887656884427999999


Q ss_pred             ---------HHHHHHHHCCCCCCHHHH-H-----------HHHHHHHHHHHHHHH----CCCCCCCCCCCCEEEECCCCC
Q ss_conf             ---------999899845887799999-9-----------999988999999998----699813279985510014641
Q gi|254781043|r   78 ---------HLYDTIKGSDWLGDVDAI-Q-----------YLAMEAPQSVYELEH----YGVPFSRNEAGKIYQRPFGGH  132 (611)
Q Consensus        78 ---------~~~Dt~~~g~~l~d~~lv-~-----------~~~~~a~~~i~~Le~----~Gv~f~r~~~G~~~~~~~gg~  132 (611)
T Consensus        82 neqFe~Srqfws~lv~~g-~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~-~i~~w-~P--  156 (489)
T pfam06039        82 NEQFQISRQFWAYLVKEG-VLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPE-KIKEW-VP--  156 (489)
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHH-HHHHH-CC--
T ss_conf             999999999999998758-98985785056881589877698899999999850587867778447989-99864-48--


Q ss_pred             CCCCCCCCCCC-EEEE--ECCCC---CHHHHHHHHHHHHH-CCCEEECCCEEEEEEECCCCCCEEEEEEEECCCEEEEEC
Q ss_conf             14567876564-0798--66654---26678999999873-123031131565200013443012468980587089950
Q gi|254781043|r  133 MQNYGEGPPVQ-RTCA--AADRT---GHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFS  205 (611)
Q Consensus       133 ~~~~~~g~~~~-R~~~--~~d~t---G~~i~~~L~~~~~~-~gv~i~~~~~~~~Li~d~dG~V~Gav~~~~~~G~~~~i~  205 (611)
T Consensus       157 --Lv~~gR~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~-v~v~~~~~~~~~~~~  233 (489)
T pfam06039       157 --LMMEGRDPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWT-VTVKDLNTGDKRTIK  233 (489)
T ss_pred             --CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEE-EEEEECCCCCEEEEE
T ss_conf             --00379797885579944887401189999999999851898289927885345888999879-999865789748998


Q ss_pred             CCCEEEECCCCC
Q ss_conf             672474157656
Q gi|254781043|r  206 AKLVVLATGGYG  217 (611)
Q Consensus       206 AkaVILATGG~~  217 (611)
T Consensus       234 A~fVfvgAGG~s  245 (489)
T pfam06039       234 AKFVFIGAGGGA  245 (489)
T ss_pred             ECEEEECCCHHH
T ss_conf             267998887577