>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. Length = 603

Score = 268 bits (687), Expect = 3e-72 Identities = 175/635 (27%), Positives = 266/635 (41%), Gaps = 75/635 (11%) Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGI-AASLANMTPDSWQW 77 V+VVG G AG A +AE G+ + V P R+H++AAQGGI A DS Sbjct: 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWR 60 Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137 H DT+KG D+ ++ LA+ +P+ + ++ GVPF+R G + R FGG Sbjct: 61 HFDDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ---- 116 Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA----LDLIINSEGCCVGVVA 193 V RT A +TG +L L + A +E + LD+I+ G++A Sbjct: 117 ----VSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIA 172 Query: 194 WQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253 L TGEI SA V+LATGGYG + +T+A A G + EF+Q H Sbjct: 173 RNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIH 232 Query: 254 PTGIYGAGC------LITEGARGEG--------------GYLVNSKGERFMERYAPSAKD 293 PT I G L++E R +G + K + F+ER P+ + Sbjct: 233 PTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGN 292 Query: 294 LASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP----AVLQERLPGISESARIFAG 349 L RD+ SR + G+GVG ++ ++L + D + + + E F G Sbjct: 293 LVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTG 352 Query: 350 VDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR 409 D + P+ + P VHY MGG+ +Y + PGL A GE S HGANR Sbjct: 353 DDPYKVPMRIFPAVHYTMGGLWVDY----------DQMTNIPGLFAAGECD-FSQHGANR 401 Query: 410 LGSNSLIDLVVFGRAA----------VIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRH 459 LG+NSL+ + G A +SE + + +P ++ +RFDRL Sbjct: 402 LGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALA---EEQERFDRLLK 458 Query: 460 ADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNS 518 G L ++ M + GV R + L + L + + + + N Sbjct: 459 MRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQ 518 Query: 519 DLVETLELQNLMINAIATVYSAEARKESRGSHAREDF--KDGEFGGRDDVNWRKHSLCWV 576 L + + + A A R ES G+H R +F DGE R+D + K + Sbjct: 519 VLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFPTPDGE-AERNDEEFLKVTAWEF 577 Query: 577 DWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611 + Y +D+ + P+ R Y Sbjct: 578 QGENDAPEFHYEE---------LDFELVPPRKRDY 603

RPSBLAST alignment for GI: 254781043 and conserved domain: TIGR01811