RPSBLAST alignment for GI: 254781043 and conserved domain: TIGR01812

>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. Length = 566
 Score =  786 bits (2031), Expect = 0.0
 Identities = 314/596 (52%), Positives = 398/596 (66%), Gaps = 33/596 (5%)

Query: 19  DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQW 77
           DVV+VGAG AGLRA +  A+ G  TA I+KV+PTRSHTVAAQGG+AA+L N+ P DSW+W
Sbjct: 1   DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEW 60

Query: 78  HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
           H YDT+KGSD+L D DA++Y+  EAP+++ ELEH+GVPFSR   G+I QRPFGGH ++  
Sbjct: 61  HAYDTVKGSDYLADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD-- 118

Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197
                 RTC AAD+TGHA+LHTLY Q LK    FF EYFALDLI + +G   GVVA+ L+
Sbjct: 119 ------RTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLK 171

Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257
           TGEI  F AK VVLATGGYGR Y + T+AH  TGDG  M  RAG+PL+DMEFVQFHPTG+
Sbjct: 172 TGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231

Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317
           Y +G LITEG RGEGGYLVN  GERFMERYAP   +LA RDVVSR M  EIREGRGVG  
Sbjct: 232 YPSGILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSP 291

Query: 318 -KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWG 376
             D+++L L HL    ++ERLP I E A+ FAGVD  ++PIPV PT HY+MGGIPT+Y G
Sbjct: 292 PGDYVYLDLRHLGEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTG 351

Query: 377 EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436
            V        E    GL A GE  C SVHGANRLG NSL++LVVFGR A   A+E   K+
Sbjct: 352 RV------ICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKT 405

Query: 437 -SPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCR 495
            +P   ++  +        D L  ++G    A +RE++   M  + G+FRT++ L     
Sbjct: 406 GNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVD 465

Query: 496 NLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555
            +  L +   +++++D+S ++N+DL+E LEL N++  A      A  RKESRG+HARED+
Sbjct: 466 EIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDY 525

Query: 556 KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
            +     RDD NW KH+L + D N G  +L+Y+P         V  +K  P  R Y
Sbjct: 526 PE-----RDDENWLKHTLAYYD-NPGTPRLEYKP---------VTITKYEPAERKY 566