RPSBLAST alignment for GI: 254781043 and conserved domain: TIGR01812
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. Length = 566
Score = 786 bits (2031), Expect = 0.0
Identities = 314/596 (52%), Positives = 398/596 (66%), Gaps = 33/596 (5%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQW 77
DVV+VGAG AGLRA + A+ G TA I+KV+PTRSHTVAAQGG+AA+L N+ P DSW+W
Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEW 60
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H YDT+KGSD+L D DA++Y+ EAP+++ ELEH+GVPFSR G+I QRPFGGH ++
Sbjct: 61 HAYDTVKGSDYLADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD-- 118
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197
RTC AAD+TGHA+LHTLY Q LK FF EYFALDLI + +G GVVA+ L+
Sbjct: 119 ------RTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLK 171
Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257
TGEI F AK VVLATGGYGR Y + T+AH TGDG M RAG+PL+DMEFVQFHPTG+
Sbjct: 172 TGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231
Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317
Y +G LITEG RGEGGYLVN GERFMERYAP +LA RDVVSR M EIREGRGVG
Sbjct: 232 YPSGILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSP 291
Query: 318 -KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWG 376
D+++L L HL ++ERLP I E A+ FAGVD ++PIPV PT HY+MGGIPT+Y G
Sbjct: 292 PGDYVYLDLRHLGEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTG 351
Query: 377 EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436
V E GL A GE C SVHGANRLG NSL++LVVFGR A A+E K+
Sbjct: 352 RV------ICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKT 405
Query: 437 -SPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCR 495
+P ++ + D L ++G A +RE++ M + G+FRT++ L
Sbjct: 406 GNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVD 465
Query: 496 NLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555
+ L + +++++D+S ++N+DL+E LEL N++ A A RKESRG+HARED+
Sbjct: 466 EIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDY 525
Query: 556 KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
+ RDD NW KH+L + D N G +L+Y+P V +K P R Y
Sbjct: 526 PE-----RDDENWLKHTLAYYD-NPGTPRLEYKP---------VTITKYEPAERKY 566