RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781043|ref|YP_003065456.1| succinate dehydrogenase
flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62]
(611 letters)
>gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 1249 bits (3235), Expect = 0.0
Identities = 451/603 (74%), Positives = 498/603 (82%), Gaps = 8/603 (1%)
Query: 9 SSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLA 68
S+Y +DH YDVVVVGAGGAGLRATLGMAE G KTACITKVFPTRSHTVAAQGGI+ASL
Sbjct: 4 SAYKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLG 63
Query: 69 NMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP 128
NM D W+WH+YDT+KGSDWLGD DAI+Y+ EAP +VYELEHYGVPFSR E GKIYQRP
Sbjct: 64 NMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRP 123
Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188
FGG NYG+GPP QRTCAAADRTGHAILHTLY Q+LK+NAEFFIEYFALDLI++ G C
Sbjct: 124 FGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVC 183
Query: 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248
GVVAW L+ G +HRF A +VVLATGGYGRAYFSATSAHTCTGDG GMV RAGLPLQDME
Sbjct: 184 RGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDME 243
Query: 249 FVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEI 308
FVQFHPTGIYGAGCLITEGARGEGGYL NS+GERFMERYAPSAKDLASRDVVSR M +EI
Sbjct: 244 FVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEI 303
Query: 309 REGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMG 368
REGRGVGK KDHI L+L+HLDP VL ERLPGISESA+IFAGVDVT++PIPV+PTVHYNMG
Sbjct: 304 REGRGVGKKKDHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMG 363
Query: 369 GIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIR 428
GIPTNY GEVL NP+ PGLMA+GEA C SVHGANRLGSNSLIDLVVFGRAA +R
Sbjct: 364 GIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALR 423
Query: 429 ASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQD 488
A+E+I +P P L +CD+ +DRFDRLRHA+G PTA LR KMQR MQ DA VFRT +
Sbjct: 424 AAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGE 483
Query: 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548
L +G +S +W + D+KV DRSLIWNSDLVETLEL NLM A+ T+ SAE RKESRG
Sbjct: 484 VLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRG 543
Query: 549 SHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKA 608
+HAREDF D RDD NW KH+L WVD + GK+KLDYRPVH L V Y I PK
Sbjct: 544 AHAREDFPD-----RDDENWMKHTLAWVD-DKGKVKLDYRPVHLYTLTDDVQY--IPPKK 595
Query: 609 RVY 611
RVY
Sbjct: 596 RVY 598
>gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 996 bits (2578), Expect = 0.0
Identities = 380/609 (62%), Positives = 465/609 (76%), Gaps = 8/609 (1%)
Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI 63
S +L S+Y +DH+YD VVVGAGGAGLRA LG+ E G+KTACI+K+FPTRSHTVAAQGGI
Sbjct: 16 SGHLSSAYPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGI 75
Query: 64 AASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGK 123
A+L NMT D W+WH YDT+KGSDWLGD DAIQY+ EAPQ+V ELE YG+PFSR + GK
Sbjct: 76 NAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDGK 135
Query: 124 IYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIIN 183
IYQR FGG +G+G R AAADRTGHA+LHTLYGQ+LK + FFIEYFALDLI++
Sbjct: 136 IYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMD 195
Query: 184 SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLP 243
+G C GV+A +E G IHRF A V+ATGGYGRAYFS TSAHTCTGDG MV+RAGLP
Sbjct: 196 EDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLP 255
Query: 244 LQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRC 303
LQD+EFVQFHPTGIYGAGCLITEG RGEGG L NS+GERFMERYAP+AKDLASRDVVSR
Sbjct: 256 LQDLEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRA 315
Query: 304 MMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363
M +EI EGRG G +KDHI+L L HL P L ERLPGISE+A+IFAGVDVT++PIPV+PTV
Sbjct: 316 MTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTV 375
Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423
HYNMGGIPTN+ +VL + + ++ PGL+A GEA CASVHGANRLG+NSL+D+VVFGR
Sbjct: 376 HYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGR 435
Query: 424 AAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGV 483
AA E++ P P L + + + R D++RH G + TA +R++MQR MQ A V
Sbjct: 436 AAANTVMEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAV 495
Query: 484 FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEAR 543
FR +SL +G + ++ + D+K+ D+SL+WN+DL+ETLEL+NL+ A T+ SAEAR
Sbjct: 496 FRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEAR 555
Query: 544 KESRGSHAREDFKDGEFGGRDDVNWRKHSLCWV-DWNTGKIKLDYRPVHTELLCGGVDYS 602
KESRG+HAR+DF + RDD NW KH+L ++ D GK++L YRPV T L ++
Sbjct: 556 KESRGAHARDDFPE-----RDDKNWMKHTLSYIRDVKKGKVRLTYRPVITTPLDNEMET- 609
Query: 603 KIAPKARVY 611
+ P RVY
Sbjct: 610 -VPPAKRVY 617
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 963 bits (2490), Expect = 0.0
Identities = 404/604 (66%), Positives = 481/604 (79%), Gaps = 9/604 (1%)
Query: 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL 67
+SSYT VDH+YD VVVGAGGAGLRA +G++E GF TACITK+FPTRSHTVAAQGGI A+L
Sbjct: 41 RSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAAL 100
Query: 68 ANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQR 127
NMT D W+WH+YDT+KGSDWLGD DAIQY+ EAP++V ELE+YG+PFSR E GKIYQR
Sbjct: 101 GNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 160
Query: 128 PFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGC 187
FGG ++G+G R AADRTGHA+LHTLYGQA+K+N +FF+EYFALDLI++S+G
Sbjct: 161 AFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGA 220
Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM 247
C GV+A +E G +HRF A +LATGGYGRAYFSATSAHTCTGDG MVARAGLPLQD+
Sbjct: 221 CQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDL 280
Query: 248 EFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMME 307
EFVQFHPTGIYGAGCLITEG+RGEGG L NS+GERFMERYAP+AKDLASRDVVSR M ME
Sbjct: 281 EFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTME 340
Query: 308 IREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM 367
IREGRGVG KDHI+L+LNHL P VL+ERLPGISE+A IFAGVDVT++PIPV+PTVHYNM
Sbjct: 341 IREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNM 400
Query: 368 GGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVI 427
GGIPTNY GEV+ +P+ PGLMA GEA CASVHGANRLG+NSL+D+VVFGRA
Sbjct: 401 GGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 460
Query: 428 RASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQ 487
R +E+ L + ++ + D+LR+A+G +PT+ +R MQR MQ +A VFRTQ
Sbjct: 461 RVAEIAKPGEKQKPLPKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQ 520
Query: 488 DSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESR 547
++L +GC+ + WD D+KV DRSLIWNSDL+ETLEL+NL+INA T++SAEARKESR
Sbjct: 521 ETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESR 580
Query: 548 GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPK 607
G+HAREDF RDD NW KH+L + W GK++LDYRPVH L V+ PK
Sbjct: 581 GAHAREDFTK-----RDDENWMKHTLGY--WEEGKVRLDYRPVHMNTLDDEVET--FPPK 631
Query: 608 ARVY 611
ARVY
Sbjct: 632 ARVY 635
>gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein
subunit, E. coli/mitochondrial subgroup. Succinate
dehydrogenase and fumarate reductase are homologous
enzymes reversible in principle but favored under
different circumstances. This model represents a
narrowly defined clade of the succinate dehydrogenase
flavoprotein subunit as found in mitochondria, in
Rickettsia, in E. coli and other Proteobacteria, and in
a few other lineages. However, this model excludes all
known fumarate reductases. It also excludes putative
succinate dehydrogenases that appear to diverged before
the split between E. coli succinate dehydrogenase and
fumarate reductase.
Length = 565
Score = 879 bits (2274), Expect = 0.0
Identities = 365/576 (63%), Positives = 443/576 (76%), Gaps = 11/576 (1%)
Query: 36 MAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAI 95
+A+ G TAC+TK+FPTRSHTVAAQGGI+A+L NM D+W+WH+YDT+KGSDWLGD DAI
Sbjct: 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAI 60
Query: 96 QYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHA 155
+Y+ +AP++V ELEH G+PFSR E GKIYQRPFGGH +++G+G +R CAAADRTGHA
Sbjct: 61 EYMCKQAPEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHA 120
Query: 156 ILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG 215
ILHTLY Q LK + FF EYFALDL++ +G C GV+A+ LETGEIHRF AK VVLATGG
Sbjct: 121 ILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGG 179
Query: 216 YGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYL 275
YGR YFS T+AHT TGDG GMV RAGLPLQDMEFVQFHPTGI GAGCLITEG RGEGG L
Sbjct: 180 YGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGIL 239
Query: 276 VNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQE 335
+N+ GERFMERYAP+AKDLASRDVVSR M +EIREGRGVG +KDH++L L+HL P VL+
Sbjct: 240 INANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEG 299
Query: 336 RLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMA 395
RLPGISE+AR FAGVD +DPIPV+PTVHYNMGGIPTNY G+VL + ++ PGL A
Sbjct: 300 RLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVL-RDGNGNDQIVPGLYA 358
Query: 396 IGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFD 455
GEA C SVHGANRLG+NSL+DLVVFGRAA + A+E S + + ++ + + R D
Sbjct: 359 AGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAGEESVMRLD 418
Query: 456 RLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLI 515
+LR A G AALR ++QR+MQ AGVFRT + L G +S L + ++K++D+S +
Sbjct: 419 KLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKV 478
Query: 516 WNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCW 575
WN+DLVE LELQNL+ A AT SAEARKESRG+HAREDF + RDD NW KH+L +
Sbjct: 479 WNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPE-----RDDENWLKHTLSY 533
Query: 576 VDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
VD NTGK+ L Y+PV + + + PK RVY
Sbjct: 534 VDINTGKVLLSYKPVIFK----PLTVADFEPKKRVY 565
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase.
Length = 566
Score = 786 bits (2031), Expect = 0.0
Identities = 314/596 (52%), Positives = 398/596 (66%), Gaps = 33/596 (5%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQW 77
DVV+VGAG AGLRA + A+ G TA I+KV+PTRSHTVAAQGG+AA+L N+ P DSW+W
Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEW 60
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H YDT+KGSD+L D DA++Y+ EAP+++ ELEH+GVPFSR G+I QRPFGGH ++
Sbjct: 61 HAYDTVKGSDYLADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD-- 118
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197
RTC AAD+TGHA+LHTLY Q LK FF EYFALDLI + +G GVVA+ L+
Sbjct: 119 ------RTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLK 171
Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257
TGEI F AK VVLATGGYGR Y + T+AH TGDG M RAG+PL+DMEFVQFHPTG+
Sbjct: 172 TGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231
Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317
Y +G LITEG RGEGGYLVN GERFMERYAP +LA RDVVSR M EIREGRGVG
Sbjct: 232 YPSGILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSP 291
Query: 318 -KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWG 376
D+++L L HL ++ERLP I E A+ FAGVD ++PIPV PT HY+MGGIPT+Y G
Sbjct: 292 PGDYVYLDLRHLGEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTG 351
Query: 377 EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKS 436
V E GL A GE C SVHGANRLG NSL++LVVFGR A A+E K+
Sbjct: 352 RV------ICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKT 405
Query: 437 -SPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCR 495
+P ++ + D L ++G A +RE++ M + G+FRT++ L
Sbjct: 406 GNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVD 465
Query: 496 NLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555
+ L + +++++D+S ++N+DL+E LEL N++ A A RKESRG+HARED+
Sbjct: 466 EIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDY 525
Query: 556 KDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
+ RDD NW KH+L + D N G +L+Y+P V +K P R Y
Sbjct: 526 PE-----RDDENWLKHTLAYYD-NPGTPRLEYKP---------VTITKYEPAERKY 566
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 749 bits (1935), Expect = 0.0
Identities = 293/601 (48%), Positives = 395/601 (65%), Gaps = 26/601 (4%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75
H YDVV+VGAGGAG+RA + A +TA +TK++PTRSHT AAQGG+ A+LAN+ D+W
Sbjct: 4 HRYDVVIVGAGGAGMRAAI-EAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNW 62
Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135
+WH +DT+KG D+L D DA + +A EA +V +LE G+PF+R GKI QR FGGH ++
Sbjct: 63 EWHTFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRD 122
Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSE---GCCVGVV 192
+G+ P V+R C AADRTGH IL TLY +K+ EFF E++ LDL++ GVV
Sbjct: 123 HGKAP-VRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVV 181
Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252
A++L TGEIH F AK VV ATGG GR Y + ++AHT TGDG G+V R GLPL+DMEF QF
Sbjct: 182 AYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQF 241
Query: 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGR 312
HPTG+ G G LI+E ARGEGG L N++GERFMERYAP+ KDLA RD+V+R M++E+REGR
Sbjct: 242 HPTGLAGLGILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGR 301
Query: 313 GVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT 372
G G +KD+++L L HL VL+ +LP I+E AR + GVD ++P+PV PT HY MGGIPT
Sbjct: 302 GAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPT 361
Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432
GEVL N PGL A GE C SVHGANRLG+NSL+D+ VFGR A I A+E
Sbjct: 362 TVDGEVLRDN----TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEY 417
Query: 433 IDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSD 492
+ + L + +++ + L G+ A +R ++Q++M +A VFRT+++L
Sbjct: 418 ARGADFVD-LPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQ 476
Query: 493 GCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAR 552
++ L + + V D+ +N+DL+E +EL L+ A TV A RKESRG HAR
Sbjct: 477 ALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAR 536
Query: 553 EDFKDGEFGGRDDVNWRKHSLCWVDW--NTGKIKLDYRPVHTELLCGGVDYSKIAPKARV 610
ED+ + RDDVN+ KH++ + + I+LDY+PV ++ P R
Sbjct: 537 EDYPN-----RDDVNYMKHTMAYKEGTDLLSDIRLDYKPVVQ---------TRYEPMERK 582
Query: 611 Y 611
Y
Sbjct: 583 Y 583
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 703 bits (1816), Expect = 0.0
Identities = 314/597 (52%), Positives = 406/597 (68%), Gaps = 21/597 (3%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77
+DVV+VGAGG+G+RA+L +A G A ++KVFPTRSHTVAAQGGI ASL NM+ D+W +
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHY 72
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H YDTIKGSDWLGD DAI+++ EAP VYELEH+G+PF RN G IYQRPFGGH NYG
Sbjct: 73 HFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG 132
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197
E PVQR CAAADRTGHA+LHTLY Q + +FF+E+ ALDLI +++G +GV A ++E
Sbjct: 133 E-KPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME 191
Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257
TG+++ AK + ATGG GR + ++T+A TGDG GM ARAG+PLQDMEF QFHPTG+
Sbjct: 192 TGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHPTGV 251
Query: 258 YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317
GAG LITEG RGEGG L N GERFMERYAP+ KDLA RD VSR M EI+EGRG G +
Sbjct: 252 AGAGVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPN 311
Query: 318 KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGE 377
DH+ L L HL + +RLP I E A FA VD ++PIPV+PT+HY MGGIPTN G+
Sbjct: 312 GDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQ 371
Query: 378 VLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA---VIRASEMID 434
V+ S++ + G AIGE C SVHGANRLG+NSL+DLVVFGRAA ++ +
Sbjct: 372 VVG-TSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQH 430
Query: 435 KSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC 494
+ P+P+ + D + R +L + + ++ MQ AGVFRTQ L +G
Sbjct: 431 EHKPLPA---DAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGV 487
Query: 495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED 554
+ L + + ++ + D+S ++N+ VE LE+ NL+ A AT+ SA ARKESRG+HA D
Sbjct: 488 EQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSD 547
Query: 555 FKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
++ RDD NW KH+L W + +LDY+PV + L V+ + PKAR +
Sbjct: 548 YEH-----RDDENWLKHTL----WYSEGNRLDYKPVQMKPLT--VES--VPPKARTF 591
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 700 bits (1808), Expect = 0.0
Identities = 304/602 (50%), Positives = 385/602 (63%), Gaps = 25/602 (4%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75
+D VV+GAGGAG+RA L +++ G A ++KVFPTRSHTV+AQGGI +L N D+W
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNW 65
Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135
+WH+YDT+KGSD++GD DAI+Y+ P+++ ELEH G+PFSR + G+IYQRPFGG +N
Sbjct: 66 EWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKN 125
Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQ 195
+G G RT AAADRTGHA+LHTLY Q LKN+ F E++ALDL+ N +G VG A
Sbjct: 126 FG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAIC 184
Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255
+ETGE+ F A+ VLATGG GR Y S T+AH TGDG GM RAG+P+QDME QFHPT
Sbjct: 185 IETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244
Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV- 314
GI GAG L+TEG RGEGGYL+N GERFMERYAP+AKDLA RDVV+R +M+EIREGRG
Sbjct: 245 GIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304
Query: 315 GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY 374
G H L L+HL VL+ RLPGI E +R FA VD ++PIPVIPT HY MGGIPT
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKV 364
Query: 375 WGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434
G+ L N K + PGL A+GE C SVHGANRLG NSL+DLVVFGRAA + E +
Sbjct: 365 TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLA 424
Query: 435 KSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGC 494
+ + S + + R +R + +R+ +Q MQ + VFR D+++ G
Sbjct: 425 EQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGL 484
Query: 495 RNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARED 554
L + + + + ++ D S +N+ +E LEL NLM A AT SA R ESRG+H+R D
Sbjct: 485 EELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFD 544
Query: 555 FKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKI-----APKAR 609
F D RDD NW HSL Y P + V+ PK R
Sbjct: 545 FPD-----RDDENWLCHSL-------------YLPETESMTRRSVNMEPKLRPAFPPKIR 586
Query: 610 VY 611
Y
Sbjct: 587 TY 588
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 698 bits (1802), Expect = 0.0
Identities = 300/584 (51%), Positives = 389/584 (66%), Gaps = 16/584 (2%)
Query: 30 LRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DSWQWHLYDTIKGSDW 88
+RA L +A+ G KTA +TKVFPTRSHTV+AQGGI ++A+ P D W+WH+YDT+KGSD+
Sbjct: 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDY 60
Query: 89 LGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEGPPVQRTCAA 148
+GD DAI+Y+ P++V+ELEH G+PFSR E G+IYQRPFGG +++G+G RTCAA
Sbjct: 61 IGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAA 120
Query: 149 ADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKL 208
ADRTGHA+LHTLY LKN F E++A+DL+ N +G VGV+A +ETGE +K
Sbjct: 121 ADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKA 180
Query: 209 VVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGA 268
VLATGG GR Y S T+A TGDG GM RAG+P+QD+E QFHPTGI GAG L+TEG
Sbjct: 181 TVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240
Query: 269 RGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHL 328
RGEGGYL+N GERFMERYAP+AKDLA RDVV+R M+ EI G G G +KDH+ L L+HL
Sbjct: 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHL 300
Query: 329 DPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPER 388
VL RLPGI E ++ FA VD PIPV+PT HY MGG+ TN G+ + ++ ++
Sbjct: 301 GEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQ 360
Query: 389 FAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCD 448
PGL A+GE C SVHGANRLG NSL+DLVVFGRAA + + + + S D
Sbjct: 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIEYRDASESDID 420
Query: 449 RIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLK 508
+ R ++L G AALR ++Q MQ GVFRT + + G L+ L + +A++K
Sbjct: 421 AALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480
Query: 509 VHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568
++D+S +N+ +E LELQNL+ A AT +AE RKESRG+HAREDF+D RDD NW
Sbjct: 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFED-----RDDENW 535
Query: 569 RKHSLCW-VDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
H+L + + GK +++ P PK R Y
Sbjct: 536 LCHTLYFPGEKRVGKRAVNFAPKTVP---------AFEPKVRTY 570
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 577 bits (1489), Expect = e-165
Identities = 258/581 (44%), Positives = 348/581 (59%), Gaps = 27/581 (4%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKG---FKTACITKVFPTRSHTVAAQGGIAASLANMTPD 73
YDVV+VG+G AGLRA + AE+ A ++K P RSH+V+A+GG AA L D
Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64
Query: 74 SWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHM 133
S+ H YDT+KGSD+L D DA++ EAP+ + L+H+GVP+SR G+I QRPFGG
Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGM- 123
Query: 134 QNYGEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVV 192
RT AAD+TG I+HTLY +AL+ +N F+ E+F LI+ G GV
Sbjct: 124 -------SFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVT 175
Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252
A L+ GE F AK ++ATGG GR Y T AH+ TGDG + RAG+PL+DMEFVQF
Sbjct: 176 AIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQF 235
Query: 253 HPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGR 312
HPTG+ +G LITE ARGEGGYL+N +GERFM+RYAP +LA RDVVSR +M EI EGR
Sbjct: 236 HPTGLVPSGILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGR 295
Query: 313 GVGKSKD--HIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGI 370
G ++ L L HL + ERLP I E A+ +AG+D +PIPV P HY MGGI
Sbjct: 296 GFKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGI 355
Query: 371 PTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRAS 430
T+ +G VL A+ + + GL A GEA SVHGANRLGSNS + +V+GR A +A+
Sbjct: 356 HTDVYGRVLTADGE----WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411
Query: 431 EMIDKSSPIPSLDISSCDRIMDR-FDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDS 489
E K S ++ R FD+L +G P+ +R ++ M + G+FR +
Sbjct: 412 EYALKRPAPSSPVEKLAEKEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGIFRDESG 471
Query: 490 LSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS 549
L++ + + L + ++++ D+S I+N+DL + LEL ++ A A R ESRG+
Sbjct: 472 LAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGA 531
Query: 550 HAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590
H R D+ RDD NW KH+L + G K+ Y PV
Sbjct: 532 HYRLDYPK-----RDDENWLKHTLAYYT--GGGPKVTYTPV 565
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 561 bits (1447), Expect = e-160
Identities = 252/605 (41%), Positives = 341/605 (56%), Gaps = 44/605 (7%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTP-DS 74
+DVV+VG G AG RA L + A + K P RSH+VAAQGGIAASL N+ P DS
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDS 63
Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134
W+ H +DT+KGSD+L D DA+ L EAP + +LEH GV FSR G+I QR FGGH
Sbjct: 64 WEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH 123
Query: 135 NYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAW 194
N RTC AAD+TGHAILH L + + E++ + LI+ + GVV +
Sbjct: 124 N--------RTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMY 174
Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254
+ G + AK V+ ATGGYGR + + ++ + TGDG M A AGLPL+DMEFVQFHP
Sbjct: 175 HIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHP 234
Query: 255 TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314
TG+Y G LI+E RGEG YL+NS+G+RFM YAPS +LA RD+ SR + +EIR GRG+
Sbjct: 235 TGLYPVGVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGI 294
Query: 315 G----KSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGI 370
++L L H+ + R+P E A GVD +P+PV PTVHY MGGI
Sbjct: 295 NPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGI 354
Query: 371 PTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR---AAVI 427
P N G V ++ + G A GE C SVHGANRLGSNSL++ VV+GR AA+
Sbjct: 355 PVNTDGRVR----RSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410
Query: 428 RASEMIDKSSPIPSLDISS-CDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRT 486
+ +P +D R L G LR++ Q M GVFRT
Sbjct: 411 EYVQ----GRKLPEVDEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRT 466
Query: 487 QDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKES 546
++ + +G + L + + + D+ WN++L+E LEL++LM+ + SA R+ES
Sbjct: 467 EEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQES 526
Query: 547 RGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAP 606
RG+H+RED+ RDD N+ KH+L + ++ I + Y P V + P
Sbjct: 527 RGAHSREDYPQ-----RDDQNFLKHTLAY--YSPAGIDIQYMP---------VVITMFEP 570
Query: 607 KARVY 611
+ R Y
Sbjct: 571 QERKY 575
>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 484 bits (1248), Expect = e-137
Identities = 243/610 (39%), Positives = 346/610 (56%), Gaps = 52/610 (8%)
Query: 19 DVVVVGAGGAGLRATLGMAEK--GFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76
D+ ++GAGGAGLRA + AE K A I+KV+P RSHTVAA+GG AA + DS+
Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQD--HDSFD 63
Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY 136
+H +DT+ G DWL + D ++Y P + +LE +G P+SR G + R FGG M+
Sbjct: 64 YHFHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG-MK-- 120
Query: 137 GEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQ 195
++RT AAD+TG +LHTL+ +LK + F E+F LD++++ +G G+VA
Sbjct: 121 -----IERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMN 174
Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255
+ G + + A VV+ATGG GR Y T+ TGDG GM R G+PL+DMEFVQ+HPT
Sbjct: 175 MMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPT 234
Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------PSAK--DLASRDVVSRCM 304
G+ G+G L+TEG RGEGG LVN G R+++ Y P K +L RD VS+
Sbjct: 235 GLPGSGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAF 294
Query: 305 MMEIREGRGVGKSK-DHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363
E R+G + + D ++L L HL L ERLP I E A+ + GVD ++PIPV PT
Sbjct: 295 WHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTA 354
Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423
HY MGGI T+ +N E GL A+GE +HGANRLGSNSL +LVVFGR
Sbjct: 355 HYTMGGIETD----------QNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGR 404
Query: 424 AAVIRASEMIDKSSPIPS--LDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481
A +A+E + P LD + D + R L + +G A +R++M +M+
Sbjct: 405 VAGEQAAERAATAGPGNEAALDAQAAD-VEQRLKALVNQEGGENWAKIRDEMGLSMEEGC 463
Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAE 541
G++RT + + L+ L + +++ D S ++N+DL+ T+EL + A +SA
Sbjct: 464 GIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSAL 523
Query: 542 ARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDY 601
ARKESRG+H R D RDDVN+ KH+L + + + G +++Y V
Sbjct: 524 ARKESRGAHQR---LDEGCTERDDVNFLKHTLAFYNAD-GTPRIEYSDVKI--------- 570
Query: 602 SKIAPKARVY 611
+K P RVY
Sbjct: 571 TKSPPAKRVY 580
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 464 bits (1195), Expect = e-131
Identities = 243/598 (40%), Positives = 351/598 (58%), Gaps = 39/598 (6%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASL-ANMTP-DS 74
YD VV+G G AGL + +A GFK A I+KVFPTRSH+ AA+GGIAA + N P D+
Sbjct: 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDN 64
Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134
+ YDT+KG D+L D DA + L+ ++ + V LE +G F+R G++ R FGG Q
Sbjct: 65 PDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG--Q 122
Query: 135 NYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAW 194
Y RT D+TG A+LHTL+ + N +F+ E+F+LDL+ + VG+VA
Sbjct: 123 TY------PRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAM 175
Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254
Q++T F K VVLATGG G Y T+++ TGDG G+ RAG L+D EFVQFHP
Sbjct: 176 QMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHP 235
Query: 255 TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314
T +Y + LI+E ARGEGG L N KGERFM +YAP DLA RD+VSR ++ EIREGRG
Sbjct: 236 TALYPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF 295
Query: 315 GKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNY 374
++ L L HL ++ERL E+A+ FAGVD +PIPV P HY MGGI
Sbjct: 296 --PGGYVGLDLTHLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGID--- 350
Query: 375 WGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMID 434
+D + +NP+ GL + GEA C SVHGANRLGSNSL+D +VFG+ + +
Sbjct: 351 ----VDIDGRNPD--IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404
Query: 435 KSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDG 493
+ P+ + ++++D + ++ V + EK++ M G++R + L +
Sbjct: 405 SNPGNPTSNYEKEAEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLNA 464
Query: 494 CRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHARE 553
++ L ++++ V D+S ++N++ LEL+N++ A+ SA RKESRG+H R
Sbjct: 465 MSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRT 524
Query: 554 DFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
D+ D RDD NW KH++ ++ NT +++ ++PV ++ P+ RVY
Sbjct: 525 DYPD-----RDDNNWLKHTIAYLRGNT--VEVTFKPVKI---------TRWKPEPRVY 566
>gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 447 bits (1150), Expect = e-126
Identities = 241/609 (39%), Positives = 333/609 (54%), Gaps = 50/609 (8%)
Query: 19 DVVVVGAGGAGLRATLGMAEKG--FKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76
D+ V+GAGGAGLRA + AE A I+KV+P RSHTVAA+GG AA + DS
Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGD--DDSLD 62
Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY 136
H +DT+ G DWL + D ++Y EAP+ + +LEH+G P+SR G++ R FGG M+
Sbjct: 63 EHFHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG-MK-- 119
Query: 137 GEGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQ 195
+RT AAD+TG +LHTL+ +L + E+F DL+++ +G G+VA +
Sbjct: 120 -----KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIE 173
Query: 196 LETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPT 255
+ G + A VVLATGG GR Y T+ TGDG M R G+PL+DMEFVQ+HPT
Sbjct: 174 MAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPT 233
Query: 256 GIYGAGCLITEGARGEGGYLVNSKGERFMERYA---------PSAK--DLASRDVVSRCM 304
G+ G G L+TEG RGEGG LVN G R+++ Y P K +L RD VS+
Sbjct: 234 GLPGTGILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAF 293
Query: 305 MMEIREGRGVGKSK-DHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363
E +G + D ++L L HL +L ERLP I E A+ + VD ++PIPV PTV
Sbjct: 294 WHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTV 353
Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423
HY MGGI T+ N E GL A+GE +HGANRLGSNSL +LVVFGR
Sbjct: 354 HYTMGGIETD----------INCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGR 403
Query: 424 AAVIRASEMIDKSSPIPSLDISSCDR-IMDRFDRLRHADGHVPTAALREKMQRAMQLDAG 482
A A+E + I + R + R +RL G A +R +M M+ G
Sbjct: 404 RAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGCG 463
Query: 483 VFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEA 542
++R + L+ L + + D S ++N+DL+ +EL + A A V+SA
Sbjct: 464 IYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALR 523
Query: 543 RKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVDYS 602
RKESRG+H R D E RDDV++ KH+L + + + G +++ Y PV +
Sbjct: 524 RKESRGAHQRLDEGCTE---RDDVHFLKHTLAFRE-SDGTLRVGYSPVKI---------T 570
Query: 603 KIAPKARVY 611
+ P RVY
Sbjct: 571 RWPPGERVY 579
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 406 bits (1045), Expect = e-113
Identities = 220/614 (35%), Positives = 304/614 (49%), Gaps = 72/614 (11%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP--- 72
D +V+GAG AGLR + A++G T ++ V RSH+ AAQGG+ ASL N
Sbjct: 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEG 63
Query: 73 DSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGK--------- 123
D+ H DT+KGSDW D + + AP++V EL +GVP++R AG
Sbjct: 64 DNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEK 123
Query: 124 ------------IYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF 171
I R FGG + RTC AD TGH +L+ + +A+K
Sbjct: 124 VTITEKEEAHGLINARDFGGTKK--------WRTCYTADGTGHTMLYAVDNEAIKLGVPV 175
Query: 172 FIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTG 231
A+ LI + + C G V L TGE+ + AK ++ATGGYGR Y T+A C G
Sbjct: 176 HDRKEAIALIHDGKRC-YGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234
Query: 232 DGAGMVARAGL-PLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPS 290
GA + G+ PL +ME VQFHPT I +G L+TEG RG+GG L + G RFM Y P
Sbjct: 235 IGAAIALETGVAPLGNMEAVQFHPTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPE 294
Query: 291 AKDLASRDVVSRCMMMEIREGRGVGKSK--DHIHLYLNHLDPAVLQERLPGISESARIFA 348
K+LASRDVVSR M IR+G+GV KS H+ L + L ++ L + E F
Sbjct: 295 KKELASRDVVSRRMTEHIRKGKGV-KSPYGPHLWLDIRILGRKHIETNLREVQEICENFL 353
Query: 349 GVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAP---GLMAIGEAGCASVH 405
G+D +D IPV PT HY+MGGI TN GE + GL + GEA C +H
Sbjct: 354 GIDPAKDWIPVRPTQHYSMGGIRTNPTGE------------SYGLKGLFSAGEAACWDMH 401
Query: 406 GANRLGSNSLIDLVVFGRAAVIRASEMID--KSSPIPSLDISS------CDRIMDRFDRL 457
G NRLG NSL + VV G I + D + L+I + + DR D L
Sbjct: 402 GFNRLGGNSLAETVVAGM---IVGKYVADFCLGN---ELEIDTALVEKFVKKQQDRIDEL 455
Query: 458 RHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWN 517
+G ++ +MQ M G+FR L + L L + ++ + + N
Sbjct: 456 IAGEGKENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGAN 515
Query: 518 SDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLC-WV 576
+L E L + ++ A+ Y A AR ESRG+HARED+ R+D +W +L W
Sbjct: 516 PELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYPK-----RNDRDWLNRTLASWP 570
Query: 577 DWNTGKIKLDYRPV 590
+ + L+Y P+
Sbjct: 571 EGEALEPTLEYEPL 584
>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 386 bits (993), Expect = e-107
Identities = 204/555 (36%), Positives = 288/555 (51%), Gaps = 62/555 (11%)
Query: 19 DVVVVGAGGAGLRATLG--------MAEKG--FKTACITKVFPTRSHTVAAQGGIAASLA 68
DV+++G+GGAG RA + + KG K+ C TV A+GG A L
Sbjct: 9 DVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGC----------TVMAEGGYNAVLN 58
Query: 69 NMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRP 128
DS++ H DT+KG +L D ++ L EAP+ + +LE +G F R E G+I QRP
Sbjct: 59 P--EDSFEKHFEDTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRP 116
Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCC 188
FGG Q++ RTC A DRTGH ++ L +K + E A+ LI++
Sbjct: 117 FGG--QSF------NRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREV 168
Query: 189 VGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDME 248
+G + L GEI AK +LATGG G+ Y ++ TGDG + RAG L DME
Sbjct: 169 IGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDME 228
Query: 249 FVQFHPTGI----YGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304
VQFHPTG+ G G L+TE RGEGG L N GERFM+RY P +L++RDVV+R +
Sbjct: 229 MVQFHPTGMVYPYSGRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAI 288
Query: 305 MMEIREGRGVGKSKDHIHLYLN--HLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPT 362
EI+EGRG +H +YL+ HL V++E+L + E GVD+ ++P+ V PT
Sbjct: 289 YTEIQEGRGT----NHGGVYLDVTHLPDEVIEEKLETMLEQFLDV-GVDIRKEPMEVAPT 343
Query: 363 VHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFG 422
H+ MGGI N E PGL A GE VHGANRLG N+L D VFG
Sbjct: 344 AHHFMGGIRINEDCETN----------IPGLFACGEV-AGGVHGANRLGGNALADTQVFG 392
Query: 423 RAAVIRASEMIDKSSPIPSLDISSCD--RIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480
A A++ + + D RI L +G + L +++++ M
Sbjct: 393 AIAGKSAAKNAENNEFKKVNRSVEEDIARIKSEIKFL---NGSINPYDLIDELKKTMWDY 449
Query: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540
+ R + L ++ L +++ DLKV+ D + LEL+N+++ A + SA
Sbjct: 450 VSIVRNEKGLKKALEEINELKEKLKDLKVNGI-----VDFNKALELENMILVAELVIKSA 504
Query: 541 EARKESRGSHAREDF 555
RKESRG+H RED+
Sbjct: 505 LLRKESRGAHYREDY 519
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 372 bits (957), Expect = e-103
Identities = 216/625 (34%), Positives = 310/625 (49%), Gaps = 84/625 (13%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP-DS 74
HSYDVVV+GAGGAGLRA + E+G + A + K ++HTV A+GG AA++ N+ P D+
Sbjct: 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDN 66
Query: 75 WQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQ 134
WQ H DT++G +L + + A EAP V+ELE YG F R + G+I QR FGGH
Sbjct: 67 WQVHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGH-- 124
Query: 135 NYGEGPPVQRTCAAADRTGHAILHTL---------YGQALKNNAEFFIEYFALDLI---I 182
P R DRTG ++ TL A + E I+ FA I +
Sbjct: 125 ---TYP---RLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELL 178
Query: 183 NSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGL 242
G G + E+G F A VVLATGG G+++ +++ TGDG + RAG
Sbjct: 179 KDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGA 238
Query: 243 PLQDMEFVQFHPTGIYGA----GCLITEGARGEGGYLVNSKGERFMERYAPSA------- 291
L +MEFVQFHPTG+ G L+TEG RG+GG L NS+G+RFM Y P
Sbjct: 239 TLINMEFVQFHPTGMVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAE 298
Query: 292 ------------------KDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLN---HLDP 330
+L RD V+R + E++ GRG H +YL+ L
Sbjct: 299 TEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRG----SPHGGVYLDIASRLPA 354
Query: 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFA 390
++ RLP + + A VD+T++P+ V PT HY MGG+ EV D ++
Sbjct: 355 EEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGV------EV-DPDTGAAT--V 405
Query: 391 PGLMAIGEAGCAS-VHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDR 449
PGL A GE CA +HG+NRLG NSL DL+VFGR A + A++ + P++ + D
Sbjct: 406 PGLFAAGE--CAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDA 463
Query: 450 IMDR----FDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMA 505
F+ R A P L ++Q+ M G+ R +D + L+ L + A
Sbjct: 464 AAREALAPFE--RPAGAENPY-TLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAA 520
Query: 506 DLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDD 565
++ V + +N L+L+N+++ + +A R ESRG H R+D D
Sbjct: 521 NVSV-EGHRQYNPGWHLALDLRNMLLVSECVARAALERTESRGGHTRDDHPGM------D 573
Query: 566 VNWRKHSL-CWVDWNTGKIKLDYRP 589
WR+ +L C D G + + +P
Sbjct: 574 PEWRRINLVCRADPVGGHVTVTRQP 598
>gnl|CDD|161923 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA.
Length = 488
Score = 330 bits (849), Expect = 5e-91
Identities = 195/547 (35%), Positives = 264/547 (48%), Gaps = 67/547 (12%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75
HS DVVV+G+G AGL A L +A++G ++K T ++ AQGGIAA LA DS
Sbjct: 1 HSCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE--TDSI 57
Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQN 135
H+ DT+ + D +A++++ +A +V L GV F R+E G GGH
Sbjct: 58 DSHVEDTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYR 117
Query: 136 YGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLIINSEGCCVGVVAW 194
R AAD TG ++ TL +AL + N ALDL+I + G VGV W
Sbjct: 118 --------RILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVW 168
Query: 195 QLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHP 254
ET E A VVLATGG G+ Y T+ TGDG + RAG+ ++D+EF QFHP
Sbjct: 169 NRETVET--CHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHP 226
Query: 255 TGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG 311
T +Y LITE RGEG YLV+ G RFM + P +LA RD+V+R + E++ G
Sbjct: 227 TALYKPRARYFLITEAVRGEGAYLVDRDGTRFMADFHPRG-ELAPRDIVARAIDHEMKRG 285
Query: 312 RGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIP 371
D + L + ++ ++R P I AG+D TR+PIPV+P HY GGI
Sbjct: 286 GA-----DCVFLDASGIEA--FRQRFPTIYAKCL-GAGIDPTREPIPVVPAAHYTCGGIS 337
Query: 372 TNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431
+ G PGL AIGE C +HGANRL SNSL++ +VFG +A S
Sbjct: 338 VDDHGRTT----------VPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387
Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQL---DAGVFRTQD 488
+S I + R + DR L+ M AG+ R
Sbjct: 388 RPPYASDISTSPPWDEPRSENPDDR----------VVLQHNMSELRSFMWDYAGIVRLTK 437
Query: 489 SLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRG 548
SL R L L E ++ EL+NL+ A SA R+ESRG
Sbjct: 438 SLERALRRLVMLQQE-----------------IDEYELRNLVQVAKLITRSALMREESRG 480
Query: 549 SHAREDF 555
+H R D+
Sbjct: 481 AHFRLDY 487
>gnl|CDD|181220 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 312 bits (801), Expect = 2e-85
Identities = 192/562 (34%), Positives = 272/562 (48%), Gaps = 69/562 (12%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWH 78
DV+++G+G A L + + + ITK S++ AQGGIAA++A T DS H
Sbjct: 5 DVIIIGSGIAALTVAKELCHE-YNVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDH 61
Query: 79 LYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGE 138
DT+ + A++YL E P+ + EL G+PF +E G ++ G H +
Sbjct: 62 FEDTLVAGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKR--- 118
Query: 139 GPPVQRTC-AAADRTGHAILHTLYGQALKNNAEFFIEY-FALDLIINSEGCCVGVVAWQL 196
R A D TG +L L + + + +E +DLII G C+GV+ +
Sbjct: 119 -----RILHAGGDATGKNLLEHLLQELVPHVT--VVEQEMVIDLII-ENGRCIGVL-TKD 169
Query: 197 ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG 256
G++ R+ A VVLA+GG G Y ++ T TGDG M RAG L D+EF+QFHPT
Sbjct: 170 SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTM 229
Query: 257 IYGAG-C--LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRG 313
+Y G C L++E RGEG L+N G RFM P DLA RDVV+R + E+ G
Sbjct: 230 LYANGRCVGLVSEAVRGEGAVLINEDGRRFMMGIHPL-ADLAPRDVVARAIHEELLSGEK 288
Query: 314 VGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTN 373
V YLN +ER P IS GVD+ IPV+P H+ MGG+ TN
Sbjct: 289 V---------YLNISSIQNFEERFPTISALCEK-NGVDIETKRIPVVPGAHFLMGGVKTN 338
Query: 374 YWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMI 433
GE PGL AIGE C VHGANRL SNSL++ +VFG+ RA+E I
Sbjct: 339 LDGETS----------IPGLYAIGEVACTGVHGANRLASNSLLEGLVFGK----RAAEHI 384
Query: 434 DKSSPIPSLDISSCDRIMDRFDRL--RHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491
+ R+ ++ H+PT +E++Q M G+ RT+ SLS
Sbjct: 385 -LTKATK-------PRLNPFAEKEKKFIVLNHLPT---KEEIQEKMMKYVGIVRTEQSLS 433
Query: 492 DGCRNLS--CLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGS 549
+ R L + + + D E +EL +++ A V SA R ESRG
Sbjct: 434 EAKRWLEKYGVRNMILDHDALTN---------EEIELSHMLTVAKLIVVSALQRTESRGG 484
Query: 550 HAREDFKDGEFGGRDDVNWRKH 571
H R D+ + G++ V ++
Sbjct: 485 HYRSDYPHRNWRGKEIVRTKRK 506
>gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 307 bits (789), Expect = 4e-84
Identities = 199/571 (34%), Positives = 278/571 (48%), Gaps = 78/571 (13%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77
+D +V+G+G AGLR L +AE G A ITK P S+T AQGG++A L DS +
Sbjct: 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD--PSDSVES 86
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H+ DTI +L D + ++ + E P+ V EL G F E G ++ GGH +
Sbjct: 87 HMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHH-- 144
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAE--FFIEYFALDLIINSEG---CCVGVV 192
R AAD TG I L +A+KN+ FF +FA+DL+ + +G C G
Sbjct: 145 ------RIVHAADMTGREIERALL-EAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGAD 197
Query: 193 AWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQF 252
TGE+ RF +K+ +LA+GG G Y S T+ TGDG M RA + +MEFVQF
Sbjct: 198 VLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQF 257
Query: 253 HPTGIYGAGC------------LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300
HPT + G LITE RG+GG L N GERFM Y A +LA RDVV
Sbjct: 258 HPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERA-ELAPRDVV 316
Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGI-SESARIFAGVDVTRDPIPV 359
+R + ++++ + ++ L ++H + P I +E + G+D+T+ PIPV
Sbjct: 317 ARSIDDQLKKRN-----EKYVLLDISHKPREEILSHFPNIAAECLKR--GLDITKQPIPV 369
Query: 360 IPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLV 419
+P HY GG+ T GE N + GL A GE C +HGANRL SNSL++ +
Sbjct: 370 VPAAHYMCGGVRTGLQGE---TNVQ-------GLYAAGEVACTGLHGANRLASNSLLEAL 419
Query: 420 VFGRAAVIRASEMIDKSS----------PIPSLDISSCDRIMDRFDRLRHADGHVPTAAL 469
VF R AV + S + P + D +MD TA +
Sbjct: 420 VFARRAV-QPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEW--------TAVV 470
Query: 470 REKMQRAMQLDAGVFRTQDSLS---DGCRNLSCLWDEMADLKVHDRSLIWNSDLV--ETL 524
R+++QR M G+ R+ + L L W+ + L H W +V E
Sbjct: 471 RKELQRIMWNYVGIVRSTERLETAERKLEELEAEWEAI--LFRHG----WKPTMVGLEAC 524
Query: 525 ELQNLMINAIATVYSAEARKESRGSHAREDF 555
E++NL A V SA ARKESRG H D+
Sbjct: 525 EMRNLFCVAKLVVSSALARKESRGLHYTTDY 555
>gnl|CDD|180957 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 307 bits (789), Expect = 4e-84
Identities = 188/585 (32%), Positives = 281/585 (48%), Gaps = 78/585 (13%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQ 76
+DV+VVG+G AGL A L + + ITK S + AQGGIAA++A DS +
Sbjct: 9 QFDVLVVGSGAAGLYAALCLPSH-LRVGLITKDTLKTSASDWAQGGIAAAIAPD--DSPK 65
Query: 77 WHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRN--------EAGKIYQRP 128
H DT+K L D +A+++L +AP+++ L GV F R+ EA + RP
Sbjct: 66 LHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA--HSRP 123
Query: 129 FGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-KNNAEFFIEYFALDLIINSE-G 186
R AAD TG AI+ TL Q L + N E + AL L + E G
Sbjct: 124 ---------------RVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG 168
Query: 187 CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246
C G+ L G+I A V+LATGG G+ + T+ TGDG + RAG L+D
Sbjct: 169 RCQGISL--LYQGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRD 226
Query: 247 MEFVQFHPTGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRC 303
+EF QFHPT + G LI+E RGEG +LV+++G RF Y P A +LA RDVVSR
Sbjct: 227 LEFFQFHPTALTKPGAPRFLISEAVRGEGAHLVDAQGRRFAFDYHP-AGELAPRDVVSRA 285
Query: 304 MMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363
+ +++ + H+ L L + ++ R P I + + G+DV ++PIPV P
Sbjct: 286 IFSHLQK-TATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKW-GIDVFQEPIPVAPAA 343
Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFG- 422
HY MGG+ T+ L+ + PGL A+GE VHGANRL SNSL++ +VF
Sbjct: 344 HYWMGGVVTD-----LNNQTS-----IPGLYAVGETASTGVHGANRLASNSLLECLVFAA 393
Query: 423 RAAVIRASEMIDKSSPIPSLDIS-SCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481
+ A + S +P + + + ++++ +R+++ + A
Sbjct: 394 QLAQLELPIEPPASPDLPPISFIIDASQWKNEQEQIQR---------IRQELPELVWQSA 444
Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVH--------DRSLIWNSDLVET-----LELQN 528
G+ R D+L + ++A L + +++ +N E E +N
Sbjct: 445 GICREADTLERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRN 504
Query: 529 LMINAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSL 573
L+ A + SA R ESRG H R D+ D W+ H+L
Sbjct: 505 LLDIAYLILKSALFRTESRGGHYRLDYPQ------TDPAWQVHTL 543
>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 303 bits (779), Expect = 7e-83
Identities = 180/556 (32%), Positives = 267/556 (48%), Gaps = 52/556 (9%)
Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPD 73
+H DV+++G+G AGL L +AE + A ++K + T AQGGIAA L D
Sbjct: 5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD--ETD 61
Query: 74 SWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHM 133
S + H+ DT+ L D DA++++A A ++V L GVPF+ +E G H+
Sbjct: 62 SIESHVEDTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQ---ANGEEGYHL 118
Query: 134 QNYGEGPPVQRTCAAADRTGHAILHTLYGQALKN-NAEFFIEYFALDLII-----NSEGC 187
G G +R AAD TG A+ TL +A + N + A+DLI
Sbjct: 119 TREG-GHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRR 177
Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDM 247
VG + AK VVLATGG + Y T+ +GDG M RAG + +M
Sbjct: 178 VVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANM 237
Query: 248 EFVQFHPTGIYGAGC---LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCM 304
EF QFHPT +Y LITE RGEG YL G RFM + A +LA RD+V+R +
Sbjct: 238 EFNQFHPTCLYHPQARSFLITEALRGEGAYLKLPDGTRFMPDFDERA-ELAPRDIVARAI 296
Query: 305 MMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVH 364
E++ G D ++L ++H +++ P I E G+D+T++PIPV+P H
Sbjct: 297 DHEMKR-LGA----DCVYLDISHKPADFIRQHFPTIYERCLEL-GIDITKEPIPVVPAAH 350
Query: 365 YNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRA 424
Y GG+ ++D + + GL AIGE +HGANR+ SNSL++ +V+GR+
Sbjct: 351 YTCGGV-------MVDLHGRTD---LDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRS 400
Query: 425 A---VIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDA 481
A ++ +P+ D S R+ +D V +++ M
Sbjct: 401 AAEDILSRLPKAPMPPTLPAWDES----------RVTDSDEEVVIQHNWHELRLFMWDYV 450
Query: 482 GVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAE 541
G+ RT L + L E+ + + R +++L LEL+NL+ A V A
Sbjct: 451 GIVRTTKRLERALHRIRLLQQEIDEYYANFRV---SNNL---LELRNLVQVAELIVRCAM 504
Query: 542 ARKESRGSHAREDFKD 557
RKESRG H D+ +
Sbjct: 505 ERKESRGLHYTLDYPE 520
>gnl|CDD|181125 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 282 bits (723), Expect = 2e-76
Identities = 197/575 (34%), Positives = 255/575 (44%), Gaps = 94/575 (16%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM-TPDSWQW 77
DVVVVG+G AGL A L G + +TK T AQGGIAA L +P++
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEA--- 74
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNY- 136
H+ DT+ L D DA++ L E P++V EL G F + G+ GGH +
Sbjct: 75 HVADTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRI 134
Query: 137 ------GEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVG 190
G VQR AA R L AL ALDL+ + G G
Sbjct: 135 VHAGGDATGAEVQRALDAAVR--ADPLDIREH-AL-----------ALDLLTDGTGAVAG 180
Query: 191 VVAWQLETGE------IHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPL 244
V L G +H A VVLATGG G+ Y + T+ TGDG + RAG +
Sbjct: 181 VTLHVLGEGSPDGVGAVH---APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAV 237
Query: 245 QDMEFVQFHPTGIY-GAGC-----LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRD 298
D+EFVQFHPT ++ G LI+E RGEG LV+++G RFM P A DLA RD
Sbjct: 238 SDLEFVQFHPTVLFLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLA-DLAPRD 296
Query: 299 VVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIP 358
VV++ + ++ H+YL+ R P I+ S R AG+D R PIP
Sbjct: 297 VVAKAIDRRMKA-------TGDDHVYLDARGIEGFARRFPTITASCRA-AGIDPVRQPIP 348
Query: 359 VIPTVHYNMGGIPTNYWG--EVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLI 416
V P HY+ GG+ T+ +G V PGL A GE C VHGANRL SNSL+
Sbjct: 349 VAPAAHYSCGGVVTDVYGRTSV------------PGLYAAGEVACTGVHGANRLASNSLL 396
Query: 417 DLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRA 476
+ +V G A A+ + R + + A R ++QRA
Sbjct: 397 EGLVVGERAGAAAAAHAAAAGR-------------PRATPAVGPEPGLLPALDRAELQRA 443
Query: 477 MQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIAT 536
M AGV R+ L+ L A +V E NL + A A
Sbjct: 444 MTRGAGVLRSAAGLARAADRL----AAGAPARVVPG--------RADWEDTNLTLVARAL 491
Query: 537 VYSAEARKESRGSHAREDFKDGEFGGRDDVNWRKH 571
V +A AR ESRG H REDF D DD W +
Sbjct: 492 VAAALARTESRGCHWREDFPD-----TDD-EWARS 520
>gnl|CDD|181516 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 281 bits (720), Expect = 5e-76
Identities = 192/614 (31%), Positives = 284/614 (46%), Gaps = 62/614 (10%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTP--DSWQW 77
V+VVG G AGL AT+ AE G + V RSH+V AQGGI ++ N DS
Sbjct: 6 VIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAV-NTKGEGDSPWI 64
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H DT+ G D+L + ++ + AP ++ L+ GV F+R G + R FGG + +
Sbjct: 65 HFDDTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHH-- 122
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA----LDLIINSEGCCVGVVA 193
RT A TG +L+ L Q + + + L +++ EG C G+VA
Sbjct: 123 ------RTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVA 176
Query: 194 WQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253
L T EI F A V++ATGG G + +T++ TG A V + G + EF+Q H
Sbjct: 177 QDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIH 236
Query: 254 PTGIYGAGC--LITEGARGEGGYL-VNSKGER--FMERYAPSAKDLASRDVVSRCMMMEI 308
PT I G L++E ARGEGG + G+ F+E P+ +L RD+ +R EI
Sbjct: 237 PTAIPGDDKLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATR----EI 292
Query: 309 -----REGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTV 363
+ G+ ++ ++L L+H DP L +L GI E F G D + P+ + P V
Sbjct: 293 FDVCVEQKLGI-NGENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAV 351
Query: 364 HYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGR 423
HY+MGG+ +Y + PGL A GE S HGANRLG+NSL+ + G
Sbjct: 352 HYSMGGLWVDY----------DQMTNIPGLFAAGECD-YSYHGANRLGANSLLSAIYGGM 400
Query: 424 AAVIRASEMIDKSSPIPSLDISSCD------RIMDRFDRLRHADGHVPTAALREKMQRAM 477
A A E I K + D+SS + ++FD + DG L +++ M
Sbjct: 401 VAGPNAVEYI-KGLGKSADDVSSSVFEQALKQEQEKFDNILSMDGTENAYVLHKELGEWM 459
Query: 478 QLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATV 537
+ V R D L + + L + + V+D S N T +L N++ A
Sbjct: 460 TDNVTVVRENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVIT 519
Query: 538 YSAEARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCG 597
A R ESRG+H + +F + R+D NW K ++ + + Y
Sbjct: 520 IGALNRNESRGAHYKPEFPE-----RNDENWLKTTMATYTPEGEEPEFSYED-------- 566
Query: 598 GVDYSKIAPKARVY 611
VD S I P+ R Y
Sbjct: 567 -VDTSLIPPRKRDY 579
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes.
Length = 603
Score = 268 bits (687), Expect = 3e-72
Identities = 175/635 (27%), Positives = 266/635 (41%), Gaps = 75/635 (11%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKV-FPTRSHTVAAQGGI-AASLANMTPDSWQW 77
V+VVG G AG A +AE G+ + V P R+H++AAQGGI A DS
Sbjct: 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWR 60
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H DT+KG D+ ++ LA+ +P+ + ++ GVPF+R G + R FGG
Sbjct: 61 HFDDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ---- 116
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA----LDLIINSEGCCVGVVA 193
V RT A +TG +L L + A +E + LD+I+ G++A
Sbjct: 117 ----VSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIA 172
Query: 194 WQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFH 253
L TGEI SA V+LATGGYG + +T+A A G + EF+Q H
Sbjct: 173 RNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIH 232
Query: 254 PTGIYGAGC------LITEGARGEG--------------GYLVNSKGERFMERYAPSAKD 293
PT I G L++E R +G + K + F+ER P+ +
Sbjct: 233 PTAIPVDGTWQSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGN 292
Query: 294 LASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP----AVLQERLPGISESARIFAG 349
L RD+ SR + G+GVG ++ ++L + D + + + E F G
Sbjct: 293 LVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTG 352
Query: 350 VDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANR 409
D + P+ + P VHY MGG+ +Y + PGL A GE S HGANR
Sbjct: 353 DDPYKVPMRIFPAVHYTMGGLWVDY----------DQMTNIPGLFAAGECD-FSQHGANR 401
Query: 410 LGSNSLIDLVVFGRAA----------VIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRH 459
LG+NSL+ + G A +SE + + +P ++ +RFDRL
Sbjct: 402 LGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALA---EEQERFDRLLK 458
Query: 460 ADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMAD-LKVHDRSLIWNS 518
G L ++ M + GV R + L + L + + + + N
Sbjct: 459 MRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQ 518
Query: 519 DLVETLELQNLMINAIATVYSAEARKESRGSHAREDF--KDGEFGGRDDVNWRKHSLCWV 576
L + + + A A R ES G+H R +F DGE R+D + K +
Sbjct: 519 VLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFPTPDGE-AERNDEEFLKVTAWEF 577
Query: 577 DWNTGKIKLDYRPVHTELLCGGVDYSKIAPKARVY 611
+ Y +D+ + P+ R Y
Sbjct: 578 QGENDAPEFHYEE---------LDFELVPPRKRDY 603
>gnl|CDD|181010 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 267 bits (686), Expect = 4e-72
Identities = 177/544 (32%), Positives = 228/544 (41%), Gaps = 78/544 (14%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK-VFPTRSHTVAAQGGIAASLANMTPDSWQW 77
V+VG G AGL A L +A + ++ + + AQGGIAA+L DS
Sbjct: 11 RPVIVGGGLAGLMAALKLAPR--PVVVLSPAPLGEGASSAWAQGGIAAALG--PDDSPAL 66
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
H DT+ L D + EAP ++ +L GVPF R+ G++ H +
Sbjct: 67 HAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSR--- 123
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLE 197
+ D G AI+ L + +E ++ +G GV+A
Sbjct: 124 --RRIVH--VGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLA--AT 177
Query: 198 TGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGI 257
G A+ VVLATGG G Y T+ G G + ARAG + D EFVQFHPT I
Sbjct: 178 AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237
Query: 258 YGAG---CLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGV 314
L TE RGEG L+N GERFM P A +LA RDVV+R + EI GRG
Sbjct: 238 DIGRDPAPLATEALRGEGAILINEDGERFMADIHPGA-ELAPRDVVARAVFAEIAAGRGA 296
Query: 315 GKSKDHIHLYLNHLDP--AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPT 372
+L+ A R P + + R AG+D R PIPV P HY+MGGI
Sbjct: 297 ---------FLDARAALGAHFATRFPTVYAACRS-AGIDPARQPIPVAPAAHYHMGGIAV 346
Query: 373 NYWGEVLDANSKNPERFA-PGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431
+ G R + PGL A GE +HGANRL SNSL++ VVF RA+E
Sbjct: 347 DADG-----------RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAA----RAAE 391
Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLS 491
I +P A A LR M R GV R D L
Sbjct: 392 DI-AGTPAA--------AAAPLSAAAAPALDPADLALLRPIMSR----HVGVLRDADGLR 438
Query: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHA 551
L L +D L+I A+A A AR+ESRG+H
Sbjct: 439 RAIAALLPLEAGAGPA----------ADPATV----ALLI-AVA----ALAREESRGAHF 479
Query: 552 REDF 555
R DF
Sbjct: 480 RTDF 483
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 259 bits (663), Expect = 2e-69
Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 49/447 (10%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQW 77
DV++VG+G AGL + L + K K ++K +T AQGGI+ + D
Sbjct: 5 ADVLIVGSGVAGLYSALNL-RKDLKILMVSKGKLNECNTYLAQGGISVARNK---DDITS 60
Query: 78 HLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYG 137
+ DT+K + +++A++ LA E+ +++ +L G+ F ++E Y + G H N
Sbjct: 61 FVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE-GAHSVN-- 117
Query: 138 EGPPVQRTCAAADRTGHAILHTLYGQALK-NNAEFFIEYFALDLIINSEGCCVGVVAWQL 196
R D TG + L + K N + +D+I N + C+G + L
Sbjct: 118 ------RIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAIC--L 168
Query: 197 ETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTG 256
+ + +K+ +LATGG G + ++T+ TGDG + R + ++D++++Q HPT
Sbjct: 169 KDNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTA 228
Query: 257 IYGAGC-----LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREG 311
Y LI+E RGEGG L+NSKGERF+ +L RDVV++ ++ E+++
Sbjct: 229 FYEETIEGKKFLISESVRGEGGKLLNSKGERFV-------DELLPRDVVTKAILEEMKK- 280
Query: 312 RGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIP 371
S +++L + LD L+ R P I E + G+D+T+D IPV P HY MGGI
Sbjct: 281 ---TGSN-YVYLDITFLDKDFLKNRFPTIYEEC-LKRGIDITKDAIPVSPAQHYFMGGIK 335
Query: 372 TNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431
+D NSK + L A GE C VHGANRL SNSL++ +VF + R +E
Sbjct: 336 -------VDLNSKTSMK---NLYAFGEVSCTGVHGANRLASNSLLEGLVFSK----RGAE 381
Query: 432 MIDKSSPIPSLDISSCDRIMDRFDRLR 458
I+ L+I+ + +
Sbjct: 382 KINSEIDNIKLNITKVYTLKHDVEYYS 408
>gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 215 bits (550), Expect = 2e-56
Identities = 160/538 (29%), Positives = 239/538 (44%), Gaps = 96/538 (17%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHL 79
V +VG G AGL A + +A+KGF I +S++ AQ GIA + + DS + H+
Sbjct: 4 VGIVGGGLAGLTAAISLAKKGFDVTIIGPG-IKKSNSYLAQAGIAFPI--LEGDSIRAHV 60
Query: 80 YDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGGHMQNYGEG 139
DTI+ ++ D + + + ++ ++ L G+ F NE GGH
Sbjct: 61 LDTIRAGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNELE-------GGH------- 106
Query: 140 PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETG 199
R + TG I+ LY A + FI FA +L I + G GV G
Sbjct: 107 -SFPRVFTIKNETGKHIIKILYKHA-RELGVNFIRGFAEELAIKN-GKAYGVFL----DG 159
Query: 200 EIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYG 259
E+ +F A V+ATGG+ + + G G G P +D+EFVQFHPTG G
Sbjct: 160 ELLKFDA--TVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIG 217
Query: 260 AGC--LITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVVSRCMMMEIREGRGVGKS 317
LI+E RG G LV GERF+ +L +RD+V+R + +++EG+GV
Sbjct: 218 KRGTYLISEAVRGAGAKLVTGDGERFV-------NELETRDIVARAIYRKMQEGKGV--- 267
Query: 318 KDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGE 377
+L+ + R P I R G+D +RD IPV P HY +GGI + +
Sbjct: 268 ------FLDATGIEDFKRRFPQIYAFLRK-EGIDPSRDLIPVTPIAHYTIGGISVDTF-- 318
Query: 378 VLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS 437
KN L AIGEA HGANRL SNSL++ +V G + + I +
Sbjct: 319 -YRTGIKN-------LYAIGEAASNGFHGANRLASNSLLECIVSG----LEVARTISRER 366
Query: 438 PIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNL 497
P ++ + + H ++RE + AG+ R+++SL +G + L
Sbjct: 367 P----------KLREVKEPPYHGYELGDVDSIREILWN----HAGIVRSEESLREGLKKL 412
Query: 498 SCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSAEARKESRGSHAREDF 555
++ R L + A + A AR+ESRG+H REDF
Sbjct: 413 E-------GIEADPR----------------LKLLAKGVLECALAREESRGAHYREDF 447
>gnl|CDD|181040 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 198 bits (507), Expect = 2e-51
Identities = 193/646 (29%), Positives = 276/646 (42%), Gaps = 94/646 (14%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF-----PTRSHTVAAQGGIAASLANMTP 72
+DV+VVG G AG A + E G+ KVF P R+H++AAQGGI A+
Sbjct: 36 FDVIVVGTGLAGASAAATLGELGYNV----KVFCYQDSPRRAHSIAAQGGINAAKNYQND 91
Query: 73 -DSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFGG 131
DS YDT+KG D+ + LA + + + GVPF+R G + R FGG
Sbjct: 92 GDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG 151
Query: 132 HMQNYGEGPPVQRTCAAADRTGHAILHTLYGQAL-----KNNAEFFIEYFALDLIINSEG 186
Q V RT A +TG +L Y QAL + + LDL++ +G
Sbjct: 152 -AQ-------VSRTFYARGQTGQQLLLGAY-QALSRQIAAGTVKMYTRTEMLDLVV-VDG 201
Query: 187 CCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARAGLPLQD 246
G+VA L TGEI R +A VVLATGGYG ++ +T+A + G +
Sbjct: 202 RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFAN 261
Query: 247 MEFVQFHPTGIYGAG------CLITEGARGEGGYLVNSK------------GER--FMER 286
F Q HPT I +G L++E R +G V K ER ++ER
Sbjct: 262 PCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLER 321
Query: 287 YAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHL----YLNHLDPAVLQERLPGISE 342
P+ +L RDV SR GRGVG + ++L + L V++ER + +
Sbjct: 322 RYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFD 381
Query: 343 SARIFAGVDVTRDPIPVIPTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCA 402
G + P+ + P VHY MGG+ +Y N PGL IGEA
Sbjct: 382 MYERITGENPYETPMRIYPAVHYTMGGLWVDY----------NLMSTIPGLFVIGEANF- 430
Query: 403 SVHGANRLGSNSLIDLVV---FGRAAVIRASEMIDKSSPIPSLDISSCD----RIMDRFD 455
S HGANRLG+++L+ + F I +P S D + DR D
Sbjct: 431 SDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVSTDHPEFKEAEAEVQDRID 490
Query: 456 RLRHADGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDE-MADLKVHDRSL 514
RL + G + ++ + M G+ R ++ L + L +E +++V +
Sbjct: 491 RLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSAD 550
Query: 515 IWNSDL------VETLELQNLMINAIATVYSAEARKESRGSHAREDF--KDGEFGGRDDV 566
N +L + LEL LM A R+ES G H RE+ +DGE RDD
Sbjct: 551 ELNQELEKAGRVADFLELGELM------CRDALHREESCGGHFREEHQTEDGE-ALRDDE 603
Query: 567 NWRKHSLCWVDWNTGKIKLDYRPV-HTELLCGGVDYSKIAPKARVY 611
N+ + W GK PV H E L ++ + R Y
Sbjct: 604 NF-AYVAAWEYKGDGK-----EPVLHKEPL----EFENVKLAQRSY 639
>gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton.
Length = 439
Score = 163 bits (414), Expect = 1e-40
Identities = 141/473 (29%), Positives = 192/473 (40%), Gaps = 102/473 (21%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG---IAASLANMT---- 71
DVVVVG+G AGL A L + G + + P GG IAA N
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP-------VIGGNSAIAAGGMNAAGTDQ 53
Query: 72 ------PDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIY 125
DS + + DT+KG + D + ++ LA E+ + GV ++ +
Sbjct: 54 QKALGIEDSPELFIKDTLKGGRGINDPELVRILAEES-ADAVDWLQDGVGARLDDLIQ-- 110
Query: 126 QRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLIINSE 185
GGH P +G I+ LY +A K + + DLI + +
Sbjct: 111 ---LGGHSVPRAHRP------TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ 161
Query: 186 GCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------AY------FSATSAHTCTGDG 233
G VGVV + + I+ +AK VVLATGG+G Y +T+ TGDG
Sbjct: 162 GTVVGVVV-KGKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDG 220
Query: 234 AGMVARAGLPLQDMEFVQFHPTG-IYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAK 292
M + G L DM+++Q HPT G LI+E RG G LVN GERFM
Sbjct: 221 LLMAEKIGAALVDMDYIQAHPTASPDEGGFLISEAVRGYGAILVNKTGERFMN------- 273
Query: 293 DLASRDVVSRCMMMEIREGRGVG-------KSKDHIHLYLNHLDPAVLQE--------RL 337
+LA+RD VS I G + N+ V + +
Sbjct: 274 ELATRDTVS----DAILAQPGKSAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQ 329
Query: 338 PGISESA----------------------RIFAGVDVTRDPIPVI---PTVHYNMGGIPT 372
GI +A + D+++ P I P VH+ MGG+
Sbjct: 330 FGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSPYYAIKVTPGVHHTMGGVKI 389
Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA 425
N EVLDA K PGL A GE VHGANRLG N++ D +VFGR A
Sbjct: 390 NTKAEVLDAQGKP----IPGLFAAGEV-TGGVHGANRLGGNAIADCIVFGRIA 437
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 134 bits (340), Expect = 5e-32
Identities = 132/484 (27%), Positives = 198/484 (40%), Gaps = 81/484 (16%)
Query: 8 KSSYT---YVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64
K+SYT + YD+V+VGAGGAG+ A + + G + K+ +T+ A G+
Sbjct: 49 KTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMN 108
Query: 65 AS-----LANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRN 119
AS A DS +T+KG D ++Y + ++ L+ G+
Sbjct: 109 ASETKFQKAQGIADSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGI----- 163
Query: 120 EAGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFA-- 177
K+ G M +RT D G A+ L LKN E I F
Sbjct: 164 ---KLDNLTITGGMS-------EKRTHRPHD--GSAVGGYLVDGLLKNVQERKIPLFVNA 211
Query: 178 -LDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR------------AYFSAT 224
+ I +G GV ++ E S+K VV+ TGG+G + T
Sbjct: 212 DVTKITEKDGKVTGVKV-KINGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTT 270
Query: 225 SAHTCTGDGAGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFM 284
+ TGDG M+ + G DM+ +Q HPT LI E RGEG LVN KG+RF
Sbjct: 271 NQEGSTGDGIKMIEKLGGTTVDMDQIQIHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFG 330
Query: 285 -----------------ERYAPSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNH 327
E+YA D +D V + E +G + I
Sbjct: 331 NELDTRDKVSAAINKLPEKYAYVVFDSGVKDRVK---AIAQYEEKGFVEEGKTIDELAKK 387
Query: 328 LD-PA-VLQERLPGISESARI--------FAGVD--VTRDP---IPVIPTVHYNMGGIPT 372
++ PA L + L +++ + G+D ++ P I + P +HY MGG+
Sbjct: 388 INVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKI 447
Query: 373 NYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEM 432
N EVL + GL A GE +HG NR+G NS+ D+++FGR A +++E
Sbjct: 448 NTNTEVLKKDGSP----ITGLYAAGEV-TGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502
Query: 433 IDKS 436
Sbjct: 503 AKAQ 506
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 94.7 bits (236), Expect = 6e-20
Identities = 146/623 (23%), Positives = 238/623 (38%), Gaps = 127/623 (20%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAA---SLANM-- 70
D++V+G G AG A + E+ A +V V G I+ L N
Sbjct: 8 VETDILVIGGGTAGPMAAIKAKER--NPAL--RVLLLEKANVKRSGAISMGMDGLNNAVI 63
Query: 71 ----TPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAG---- 122
TP+ + + TI +D + D A+ A + +++ +L+ +GV F ++E G
Sbjct: 64 PGHATPEQYTKEI--TI-ANDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAV 120
Query: 123 -KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDLI 181
K++ HM +Y GH I LY Q + A L+
Sbjct: 121 KKVH------HMGSY----------VLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLL 164
Query: 182 INSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR-----------AYFSATSAHTCT 230
+++G G + + TGE AK V+L G GR Y + T+A
Sbjct: 165 TDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNA---- 220
Query: 231 GDGAGMVARAGLPLQDMEFVQFHP--TGIYGAGCLITEGARGEGGYLVNSKGERFMERYA 288
GDG M AG L ++E Q +P G C G GGY N+KGERF+E
Sbjct: 221 GDGYAMAYHAGAELANLECFQINPLIKDYNGPACAYVTGPL--GGYTANAKGERFIECDY 278
Query: 289 PSAKDLASRDVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESAR--- 345
S + MM E + G + L L+HL +Q + + R
Sbjct: 279 WSGQ-----------MMWEFYQELQSGNGP--VFLKLDHLAEETIQTIETILHTNERPSR 325
Query: 346 --IFA--GVDVTRDPIP-VIPTVHYNMG----GIPTNYWGEVLDANSKNPERFAPGLMAI 396
G D + + I + + G G+ N E PGL A
Sbjct: 326 GRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETT----------VPGLYAA 375
Query: 397 GEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSSPIPSLDISSCDRIMDR-FD 455
G+ ASV N ++ +G A A+E + +P +D + + R
Sbjct: 376 GDM--ASV------PHNYMLGAFTYGWFAGENAAEYVA-GRDLPEVDAAQVEAERARVLA 426
Query: 456 RLRHADGHVPTAALREKMQRAMQ--LDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRS 513
L DG +P A + K++R + L + + G + + + +++ +K D
Sbjct: 427 PLHREDG-LPPAQVEYKLRRLVNDYLQPP--KVTRKMEIGLQRFAEIREDLERIKARD-- 481
Query: 514 LIWNSDLVETLELQNLM----INAIATVYSAEARKESRGS--HAREDFKDGEFGGRDDVN 567
+ +L+ LE+ ++ + A A+++ R ESR H R DF + R+D
Sbjct: 482 --PH-ELMRALEVSSIRDCAEMAARASLF----RTESRWGLYHYRVDFPE-----RNDAE 529
Query: 568 WRKHSLCWVDWNTGKIKLDYRPV 590
W H+ D + G++ RPV
Sbjct: 530 WFCHTHLRKDED-GRMVSFKRPV 551
>gnl|CDD|180733 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 76.5 bits (189), Expect = 2e-14
Identities = 145/661 (21%), Positives = 242/661 (36%), Gaps = 150/661 (22%)
Query: 14 VDHSYDVVVVGAGGAGLRATLGMAE--KGFKTACITKVFPTRSHTVAAQGGIAASLA--- 68
V+ D++++G G AG A E K + K RS VA G++A A
Sbjct: 8 VEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQ--GLSAINAYIG 65
Query: 69 -NMTPDSWQWHLYDTIKGSDWLGDV--DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIY 125
TP+ + ++ D +G V D + +A V+ E +G+P ++E GK Y
Sbjct: 66 EGETPEDY----VRYVRK-DLMGIVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGK-Y 119
Query: 126 QRPFGG---HMQNYGEG--PPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180
R G M N GE P V AA G +L N F +
Sbjct: 120 VR--RGRWQIMIN-GESYKPIVAE--AAKKALGDNVL----------NRVFITDL----- 159
Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGG----Y---------GRAYFSATSAH 227
+ + G V + + + + F AK V++ATGG Y GR ++ +
Sbjct: 160 -LVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFN-- 216
Query: 228 TCTGDGAGMVARAG--LPLQDMEFVQFH------PTGIYGAGCLITEGARGEGGYLVNSK 279
TG G M RAG + + F+ P G + VN+
Sbjct: 217 --TGSGYAMGIRAGAEMTTFENRFIPLRFKDGYGPVGAW---------FLLFKAKAVNAL 265
Query: 280 GERFMERYAPSAKDLASRD---VVSRC-----MMMEIREGRGVGKSKDHIHLYLNH-LDP 330
GE + + A K + C + E + GRG I++ L
Sbjct: 266 GEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRG------PIYMDTEEALQD 319
Query: 331 AVLQERL--------PGISESARIFAGVDV--TRDPIPVIPTVHYNMGGIPT--NYW--- 375
L+ L PG A ++A ++ + ++ T Y +G YW
Sbjct: 320 KHLESELWEDFLDMTPGQ---ALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSG 376
Query: 376 -GEVLDANSK---NPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASE 431
+ + K N GL A G+ S H + S S + GR A A
Sbjct: 377 PEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFAE----GRIAAKAAVR 429
Query: 432 MI-DKSSPIPSLDISSCDRI-------MDRFDRLRHA-------DGHVPTAALREKMQRA 476
I D P +D + + ++R++ + ++ L E++Q+
Sbjct: 430 YILDNKDEKPEIDDDQIEELKKEIYAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKI 489
Query: 477 M-QLDAGV---FRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMIN 532
M + G+ + T + L + L + +E ++ K+ R L +L+ EL++ ++
Sbjct: 490 MDEYAGGISTNYTTNEKLLEIALELLEMLEEDSE-KLAARDL---HELMRCWELKHRLLV 545
Query: 533 AIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPV 590
A A + RKE+R G + R D+ G+DD NW+ D TG+ + P
Sbjct: 546 AEAHIRHLLFRKETRWPGYYERADYP-----GKDDENWKCFVNSRYDPGTGEWTIRKLPY 600
Query: 591 H 591
+
Sbjct: 601 Y 601
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 66.7 bits (163), Expect = 1e-11
Identities = 48/142 (33%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 199 GEIHRFSAKLVVLATGGYG---------RAY------FSATSAHTCTGDGAGMVARAGLP 243
G++ A V+LATGG+ R Y F T+ TGDG + + G
Sbjct: 602 GQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPWATGDGVKLARKLGAT 661
Query: 244 LQDMEFVQFHPTGIYG-------AGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLAS 296
L DM+ VQ HPTG+ L E RG GG L+N GERF+ +L
Sbjct: 662 LVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFV-------NELDL 714
Query: 297 RDVVSRCMMMEIREGRGVGKSK 318
R VVS+ ++ + E G G SK
Sbjct: 715 RSVVSQAIIAQGNEYPGSGGSK 736
Score = 59.4 bits (144), Expect = 3e-09
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 359 VIPTVHYNMGGIPTNYWGEVL-DANSKNP---ERFAPGLMAIGEAGCASVHGANRLGSNS 414
V P++HY MGG + E+ + NS N R GL GE VHG NRLG NS
Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEV-TGGVHGGNRLGGNS 883
Query: 415 LIDLVVFGRAAVIRASEMIDKSS 437
L++ VVFG+ A RA+ ++ K
Sbjct: 884 LLECVVFGKIAGDRAATILQKKK 906
>gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 66.8 bits (163), Expect = 2e-11
Identities = 144/593 (24%), Positives = 220/593 (37%), Gaps = 108/593 (18%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA-AQGGI--AASLANMTPDSW 75
DV+V+G G AG A L AE G + K S +A G+ A P+ +
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDY 74
Query: 76 QWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPF---GGH 132
+ + + +D + + + A V LE YGV F ++E G+ R G +
Sbjct: 75 ---VAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSY 131
Query: 133 MQNYGEGPPVQRTCAAADRTGHAILHTLYGQALK--NNAEFFIEYFALDL-IINSEGCCV 189
+ EG V++ LY + IE + + ++ G V
Sbjct: 132 VLPMPEGKDVKKA--------------LYRVLRQRSMRERIRIENRLMPVRVLTEGGRAV 177
Query: 190 GVVAWQLETGEIHRFSAKLVVLATGGYGR------AYFSATSAH-TCTGDGAGMVARAGL 242
G A TGE AK V+LATG GR Y T + T GDG M AG
Sbjct: 178 GAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGA 237
Query: 243 PLQDMEFVQFHP--TGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300
L +E Q +P G C A GGY VN++GERF++ D
Sbjct: 238 ELSGIECFQINPLIKDYNGPACAYV--ANPFGGYQVNAQGERFVD-----------SDYW 284
Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360
S MM E++ R + ++ I+L ++HL P L I + P
Sbjct: 285 SGQMMAEVK--REIESARGPIYLKVSHL-PEETLSALESILHTTE-----------RPTR 330
Query: 361 PTVHYNMG---------------GIPTNY--WGEVLDANSKNPERFAPGLMAIGEAGCAS 403
T H N G G+ + + G +D +++ PGL A G+ C
Sbjct: 331 GTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTT---VPGLYAAGDLACVP 387
Query: 404 VHGANRLGSNSLIDLVVFGRAAVIRASEMIDKSS---PIPSLDISSCDRIMDRFDRLRHA 460
N +I VFG A A+ + + +P+ ++ ++ R LRH
Sbjct: 388 --------HNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYR--PLRHP 437
Query: 461 DGHVPTAALREKMQRAMQLDAGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDL 520
DG P + K++R + +T LS + E+A + +L
Sbjct: 438 DGP-PQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMGART-----PHEL 491
Query: 521 VETLELQNLMINAIATVYSAEARKESRGS--HAREDFKDGEFGGRDDVNWRKH 571
+ E+ + A S+ R ESR H R D + RDD +W H
Sbjct: 492 MRCAEVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPE-----RDDASWGYH 539
>gnl|CDD|162677 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins.
Length = 614
Score = 63.4 bits (154), Expect = 2e-10
Identities = 156/665 (23%), Positives = 240/665 (36%), Gaps = 150/665 (22%)
Query: 19 DVVVVGAG----GAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDS 74
D+++VG G GA A +KG K + K RS VA G++A +
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQ--GLSAINTYLGTRF 58
Query: 75 WQWHLYDTIK--GSDWLGDV--DAIQYLAMEAPQSVYELEHYGVPFSRNEAGKIYQRPFG 130
+ + D ++ +D +G V D I +A SV+ E +G+P Y R
Sbjct: 59 GENNAEDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGR 118
Query: 131 GHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNA-EFFIEYFALDLII--NSEGC 187
+ +GE + +A KN + F F + L++ N+
Sbjct: 119 WQIMIHGESYKP-----------------IVAEAAKNALGDIFERIFIVKLLLDKNTPNR 161
Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGG-------------YGRAYFSATSAHTCTGDGA 234
G V + + E+H F AK V++A GG GRA+++ +A G
Sbjct: 162 IAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNA----GSTY 217
Query: 235 GMVARAGLPLQDME--FVQFH---PTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAP 289
M A+AG + ME FV G GA L+ + N KGE +
Sbjct: 218 TMCAQAGAEMTQMENRFVPARFKDGYGPVGAWFLLFK------AKATNGKGEEYCATNRA 271
Query: 290 SAKDLASR-----DVVSRC-----MMMEIREGRG--------------VGKSKDHIHLYL 325
K R V+ C M+ E+REGRG K HL
Sbjct: 272 MLKPYEGRGYAKPHVIPTCLRNHMMLREMREGRGPIYMDTKEALQDPFATDKKQQKHLEE 331
Query: 326 ----NHLDPAVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNMGG------------ 369
+ LD V Q L + VD ++PT Y MG
Sbjct: 332 EAWEDFLDMTVGQANLWAATN-------VDPEERGSEIMPTEPYLMGSHSGCCGIWVSGP 384
Query: 370 ---IPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAV 426
+P Y +V A N GL G+ AS H + S S + GR A
Sbjct: 385 EDWVPEEY--KVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTE----GRIAA 435
Query: 427 IRASEMIDKSSPIPSLDISSCDRI-------MDRFDRLRHA--DGHV------PTAALRE 471
A I ++ + + M+ ++ ++A V P L
Sbjct: 436 KAAVRWILDHKDFKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGL-M 494
Query: 472 KMQRAM-QLDAGV---FRTQDSLSDGCRNLSCLWDEMADL-KVHDRSLIWNSDLVETLEL 526
++Q+ M + GV + T ++L D L + +E DL K+ R L +L+ EL
Sbjct: 495 RLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAMLEE--DLEKLAARDL---HELLRAWEL 549
Query: 527 QNLMINAIATVYSAEARKESR--GSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIK 584
+ + A + RKE+R G + R DF G DD NW+ D TG+
Sbjct: 550 YHRLWTVEAHMQHILFRKETRWPGYYYRADFL-----GLDDENWKCFVNSKYDPATGETT 604
Query: 585 LDYRP 589
++ +P
Sbjct: 605 IEKKP 609
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137).
Length = 617
Score = 49.7 bits (119), Expect = 2e-06
Identities = 50/216 (23%), Positives = 71/216 (32%), Gaps = 74/216 (34%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVA------AQGGIAASLANMT 71
+DV+V+G G AG A L A G KT +T T+ A GG A
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL----DTIGKCSCNPAIGGPAKG----- 51
Query: 72 PDSWQWHLYDTIKGSDWLG-------DVDAIQYLAMEAPQSVYELEHYGVPFSRNEAGKI 124
L +K D LG D +Q+
Sbjct: 52 ------IL---VKEIDALGGLMGKAADKAGLQF--------------------------- 75
Query: 125 YQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEF-FIEYFALDLIIN 183
+ N +GP V+ T A D+ + AL+N + DLI+
Sbjct: 76 -------RVLNSSKGPAVRATRAQIDKVLYR---KAMRNALENQPNLSLFQGEVEDLILE 125
Query: 184 SEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRA 219
GVV + G +F AK V++ TG + R
Sbjct: 126 DNDEIKGVV---TQDGL--KFRAKAVIITTGTFLRG 156
>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 42.3 bits (101), Expect = 4e-04
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ------GGIA 64
YDV+VVG G AG A L A G KT +T T+ GGIA
Sbjct: 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLT----HNLDTIGQMSCNPAIGGIA 53
Score = 35.8 bits (84), Expect = 0.030
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 133 MQNYGEGPPVQRTCAAADRT--GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVG 190
M N +GP V+ A ADR A+ L Q N + F + DLI+ G VG
Sbjct: 81 MLNTSKGPAVRALRAQADRKLYRAAMREILENQ---PNLDLF-QGEVEDLIVE-NGRVVG 135
Query: 191 VVAWQLETGEIHRFSAKLVVLATG 214
VV + G F AK VVL TG
Sbjct: 136 VV---TQDGL--EFRAKAVVLTTG 154
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 41.4 bits (98), Expect = 7e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
D+ V+G G AGL A + +A G A +
Sbjct: 7 HTDIAVIGGGPAGLAAAIALARAGASVALV 36
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 40.8 bits (96), Expect = 0.001
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG 62
YDVVVVG+G AG+ A L A +G T + K P + A GG
Sbjct: 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA-PHYGGSTARSGG 51
Score = 29.6 bits (67), Expect = 2.5
Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 186 GCCVGVVAWQLETGEIHRFSAKL-VVLATGG----------YGRAYFSA---TSAHTCTG 231
G GV A E+GE A+ V+LA+GG Y RA A TG
Sbjct: 239 GRVTGVHA--AESGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTG 296
Query: 232 DG--AGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGE-GGYLVNSKGERFMERYA 288
DG AG + G L M+ + PT G R G +VN G+RFM A
Sbjct: 297 DGILAGE--KLGAALDLMDDAWWGPTIPLPGGPWFALSERNLPGSIIVNMSGKRFMNESA 354
Query: 289 P 289
P
Sbjct: 355 P 355
>gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
+DVVV+GAG G A + A+ G K ACI
Sbjct: 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACI 33
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 39.0 bits (91), Expect = 0.003
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
D +YDVVVVG+GG G+ A L A+ G + + K
Sbjct: 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEK 37
Score = 30.5 bits (69), Expect = 1.5
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSA-KLVVL 211
G A++ + AL + +LI+ +G VGVV + G A + V+L
Sbjct: 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVV--VRDGREVLIRARRGVLL 263
Query: 212 ATGGYG------RAYFSA------TSAHTC-TGDGAGMVARAGLPLQDMEFVQFHPTGIY 258
A+GG+G + Y T+A+ TG+ R G L M+ + P
Sbjct: 264 ASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVPGAPL 323
Query: 259 GAGCLITEGARGE----GGYLVNSKGERFMER---YAPSAKDLASRDVVSRCMMMEIR 309
G E G +V+ G RF+ Y + + ++D V M+M+ R
Sbjct: 324 PNGGPRPYMHNSERSKPGSIIVDRAGRRFVNEAGSYMEVGRAMYAQDAVPAWMIMDSR 381
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 39.1 bits (92), Expect = 0.003
Identities = 80/312 (25%), Positives = 108/312 (34%), Gaps = 63/312 (20%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI-------AASL 67
D DVVVVG G AG A + A G + + + A GG+ A
Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLER-AAGAGGATALSGGVIYLGGGTAVQK 76
Query: 68 ANMTPDSWQWHL-YDTIKGSDWLGDVDA--IQYLAMEAPQSVYELEHYGVPFSR------ 118
A DS + Y + VD ++ + + LE GVPF R
Sbjct: 77 AAGFEDSPENMYAYLRVAVGP---GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEK 133
Query: 119 -----NEAGKIY-----QRPFGGHMQNYGEGPPVQRT---CAAADRTGHAILHTLYGQ-A 164
N+ G Y PF P R D G A+L + A
Sbjct: 134 TSYPPNDEGLYYSGNEKAWPFAEI------AKPAPRGHRVQGPGDSGGGAMLMDPLAKRA 187
Query: 165 LKNNAEFFIEYFALDLIINSEGCCVGVVAWQL-ETGEIHRFSAKLVVLATGG-------- 215
+ + A LI++ +G VGV A + ET I + K VVLA GG
Sbjct: 188 AALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIR--ARKGVVLAAGGFAMNREMV 245
Query: 216 --YGRAYFSATSAHTCTGDGAG--MVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGE 271
Y AY T DG+G + AG M+ V A I +
Sbjct: 246 ARYAPAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVF--------AWRFIYPPSALL 297
Query: 272 GGYLVNSKGERF 283
G LVN++G+RF
Sbjct: 298 RGILVNARGQRF 309
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 38.3 bits (89), Expect = 0.006
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI 63
D DV+VVG+GG G+ A L A +G T + K T + GGI
Sbjct: 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 38.0 bits (89), Expect = 0.007
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
VVV+GAG AG A A+ G +T C+ +
Sbjct: 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVER 35
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 37.5 bits (88), Expect = 0.009
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
+DV+V+G G AGL A L AE G + A + K
Sbjct: 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAK 33
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 37.5 bits (88), Expect = 0.010
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
YD +V+GAG AG A G K A I
Sbjct: 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALI 34
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 37.3 bits (87), Expect = 0.013
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITK 48
DVV++G G AGL A + +A G K A I K
Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEK 30
>gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 419
Score = 37.3 bits (87), Expect = 0.013
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47
+DV+++G G AGL L +AE G K A I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIA 30
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 37.1 bits (87), Expect = 0.013
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTA 44
DV +VGAG +GL A +A+ G K A
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVA 52
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 36.9 bits (86), Expect = 0.015
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52
+ D+ +VG G G LG+A+ GF A + P
Sbjct: 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPA 40
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (PFAM:PF00070).
Length = 300
Score = 36.5 bits (85), Expect = 0.019
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFP 51
YDV+++GAG AGL A + A KT I + P
Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP 34
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 36.3 bits (85), Expect = 0.021
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDV+V+GAG AG A A+ G K A I K
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 36.1 bits (84), Expect = 0.024
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDVVVVGAG AG A +A+KG + + K
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEK 31
Score = 28.1 bits (63), Expect = 8.1
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGR 218
+A + AE + LD+ I+ + V + GE +AK+V+ A G
Sbjct: 100 RAQEAGAELRLGTTVLDVEIHDDR-----VVVIVRGGE-GTVTAKIVIGADGSRSI 149
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 36.2 bits (84), Expect = 0.025
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46
D+VVVG G AGL ++E G CI
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57
>gnl|CDD|162881 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is
essential for cobalamin biosynthesis (by knockout of the
R. capsulatus gene ) and is complemented by the
characterized precorrin 3B synthase CobG. The enzyme has
been shown to contain flavin, heme and Fe-S cluster
cofactors and is believed to require dioxygen as a
substrate. This model identifies the N-terminal portion
of the R. capsulatus gene which, in other species exists
as a separate protein. The C-terminal portion is
homologous to the 2-component signal transduction system
protein CitB (TIGR02484).
Length = 432
Score = 36.0 bits (83), Expect = 0.027
Identities = 86/339 (25%), Positives = 111/339 (32%), Gaps = 57/339 (16%)
Query: 130 GGHMQNYGEGP-PVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEY-FALDLIINSEGC 187
G H+Q G P R A G A+ + LY A + E I Y A+D I
Sbjct: 98 GVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFD 155
Query: 188 CVGVVAWQLETGEIHRFSAKLVVLATGGYG------RAYFSATSAH-----TCTGDG--- 233
L T HR + + +VLA GG G R + T G
Sbjct: 156 GAHDGP--LTTVGTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLL 213
Query: 234 ----AGMVARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFM----- 284
A G P D V + G ++T + G +V G RF
Sbjct: 214 LQLLAEGAQAIGDP-TDGHVVAVDARAPFHDGGIVTRIDGMQLGIVVGRDGRRFADEGAI 272
Query: 285 ---ERYAPSAKDLASR-----------DVVSRCMMMEIREGRGVGKSKDHIHLYLNHLDP 330
ERYA + LASR D R M + L +DP
Sbjct: 273 RGPERYAVWGRQLASRPGQRAYILLDADAAKRLPPMAC---PPLSADTLEELAGLLGIDP 329
Query: 331 AVLQERLPGISESARIFAGVDVTRDPIPVIPTVHYNM-GGIPTNYWGEVLDANSK---NP 386
L E L + + R A I V+P Y M GI +G V+DA ++ N
Sbjct: 330 GGLAETLDRPNAAPRTGA------RMILVVPFHAYPMIPGITFTRYGLVVDATARVRLND 383
Query: 387 ERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAA 425
L A G +V G L L VFGR A
Sbjct: 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIA 422
>gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Length = 515
Score = 35.4 bits (82), Expect = 0.044
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47
YDV+VVG G AG A + A KG +TA +
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The
motif GGXCXXXGCXP near the N-terminus contains a
redox-active disulfide.
Length = 461
Score = 35.3 bits (82), Expect = 0.045
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
+YDVVV+G G G A + A+ G K A + K
Sbjct: 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 35.1 bits (81), Expect = 0.047
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM 70
VV+GAGGAG G EKG + + + A GG A +LA++
Sbjct: 382 FVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADL 432
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 35.1 bits (82), Expect = 0.055
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDV+V+GAG G A + A+ G K A + K
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK 35
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 34.3 bits (79), Expect = 0.081
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFK 42
D +DV+V+GAG AG+ A L A G K
Sbjct: 14 DAEFDVIVIGAGAAGMSAALFAAIAGLK 41
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 34.5 bits (80), Expect = 0.089
Identities = 50/221 (22%), Positives = 75/221 (33%), Gaps = 48/221 (21%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANM--TP 72
DV+V+G G A L A L E G V + +GG + N+
Sbjct: 2 ASMVDVLVIGGGNAALCAALAAREAG------ASVLLLEAAPREWRGGNSRHTRNLRCMH 55
Query: 73 DSWQWHLYDTIKGSDWLGDVDAI----------QYLAMEAPQSVYELEHYGVPFSRNEAG 122
D+ Q L ++ D+ + + L E+ + +GV F
Sbjct: 56 DAPQDVLVGAYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRF------ 109
Query: 123 KIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLY------GQALKNNAEFFIEYF 176
Q P G + V RT A G A+++ LY G ++ +A
Sbjct: 110 ---QPPLSGAL-------HVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAP------ 153
Query: 177 ALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217
L ++ G A G R AK VVLA GG+
Sbjct: 154 VTALELDDGRFV-GARAGSAAGGAE-RIRAKAVVLAAGGFE 192
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 34.0 bits (78), Expect = 0.10
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACI 46
DV++VGAG +GL A +A+ G K +
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVL 50
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 34.1 bits (78), Expect = 0.11
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
SYDVV++G G G A + + G K AC+
Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACV 32
>gnl|CDD|184363 PRK13879, PRK13879, conjugal transfer protein TrbJ; Provisional.
Length = 253
Score = 33.9 bits (78), Expect = 0.14
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 524 LELQNLMI---NAIATVYSAEARKESRGSHAREDFKDGEFGGRDDVNW 568
L+++ L+I NAIAT A+A KE++ + A E + G + NW
Sbjct: 206 LQIRGLLIAQQNAIATRMQADADKEAQQAAAAEQLRSGSYRKSPAKNW 253
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 33.3 bits (76), Expect = 0.19
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
H+YDVVVVG+G GL A + A G K + K
Sbjct: 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEK 39
Score = 32.5 bits (74), Expect = 0.30
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 153 GHAILHTLYGQALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLA 212
G A+ L A + + A L + G GV Q G + + + VVLA
Sbjct: 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRV-QGPDGAVTVEATRGVVLA 271
Query: 213 TGGY----------------GRAYFSATSAHTCTGDGAGMVARAG 241
TGG+ GR +++ A T TGDG + G
Sbjct: 272 TGGFPNDVDRRKELFPRTPTGREHWTLAPAET-TGDGISLAESVG 315
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 33.3 bits (77), Expect = 0.20
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFK 42
DV+VVGAG AGL A +A+ G +
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGKR 29
>gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 33.3 bits (76), Expect = 0.21
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGI------------ 63
+ YD++V+G G GL A A+ G K + V PT T GG
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60
Query: 64 --AASLANMTPDS--WQWHLYDTIKGSDWLGDVDAIQ 96
AA L DS + W++ +T+K DW +A+Q
Sbjct: 61 HQAALLGQALKDSRNYGWNVEETVK-HDWNRLSEAVQ 96
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 33.0 bits (76), Expect = 0.26
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
D+VVVGAG AGL +A G K I
Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLI 32
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 32.7 bits (75), Expect = 0.30
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDVVV+GAG G A + A+ G KTA + K
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35
>gnl|CDD|178382 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 32.5 bits (74), Expect = 0.30
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAG--LRATL 34
SS+ SS + D +YD +VVG G AG L ATL
Sbjct: 42 SSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATL 74
>gnl|CDD|184512 PRK14108, PRK14108, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 986
Score = 32.7 bits (75), Expect = 0.32
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 376 GEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVFGRAAVIRASEMIDK 435
G++ + PE+ GL+ +G GA L +S IDL+VF D+
Sbjct: 171 GKLNLPDRDAPEK-GSGLIVLGMGK----LGAGELNYSSDIDLIVF-----------FDE 214
Query: 436 SSPIPSLDISSCD---RIMDRFDRL---RHADGHVPTAALR 470
++PI I + R+ R R+ R DG+V LR
Sbjct: 215 TAPILGDPIEAQPFFVRLTRRLVRILQERTGDGYVFRVDLR 255
>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 32.4 bits (75), Expect = 0.36
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50
YDV+VVG G AG A + A KG +T + + F
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF 244
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 32.4 bits (74), Expect = 0.38
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 10 SYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFK 42
+Y V+ DV+VVGAG AGL A L A G +
Sbjct: 156 TYDKVNAHCDVLVVGAGPAGLAAALAAARAGAR 188
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 32.2 bits (74), Expect = 0.44
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 22/113 (19%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSW 75
+DVVVVG G G L +A+ G + A + P R D+W
Sbjct: 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP----------------ADDAW 47
Query: 76 QWHLYDTIKGS-DWLGDVDAIQYLAMEAPQSVYELEHYG-----VPFSRNEAG 122
+Y S +L + Q L VY++ +G + FS +AG
Sbjct: 48 DSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVFGDAHARLHFSAYQAG 100
>gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH.
Length = 463
Score = 31.6 bits (72), Expect = 0.62
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46
YD+V++G+G A A + AE G A +
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMV 29
>gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 31.7 bits (73), Expect = 0.66
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
+ YD+VV+G+G AG A + A+ G + A I +
Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 31.1 bits (71), Expect = 0.82
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
S L S+ + +YDV +VG G GL + + G + A I
Sbjct: 5 AATSPTLPSTRSL---TYDVAIVGGGIVGLTLAAALKDSGLRIALI 47
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 30.9 bits (70), Expect = 0.88
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACI 46
YD+ VVG G G LG A++G A I
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVI 32
>gnl|CDD|180075 PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.
Length = 308
Score = 30.9 bits (71), Expect = 0.95
Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 37/133 (27%)
Query: 257 IYGAGCLITEGARGEGGY--------LVNSKGERFMERYAPSAKDLASRDVVSRCM---- 304
IYG G LIT GE G L+ +G R + A K + + RC
Sbjct: 144 IYGIGVLIT----GESGIGKSETALELI-KRGHRLVADDAVDIKRIGPDTLEGRCPELLQ 198
Query: 305 -MMEIREGRGVG-------------KSKDHIHL--YLNHLDPAVLQERLPGISESARIFA 348
++EIR G+G + K I L L D +RL G+ E
Sbjct: 199 HLLEIR---GLGIIDVRTLFGATAVRDKKRIQLVVELEEWDEDKEYDRL-GLDEETEEIL 254
Query: 349 GVDVTRDPIPVIP 361
GV + + IPV P
Sbjct: 255 GVKIPKITIPVRP 267
>gnl|CDD|178820 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 334
Score = 30.9 bits (71), Expect = 0.98
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 187 CCVGVVAWQLETGEIHRFSA 206
C V A L TGE R SA
Sbjct: 137 VCDYVEALDLATGEFVRLSA 156
>gnl|CDD|116565 pfam07955, DUF1687, Protein of unknown function (DUF1687). This is
a putative redox protein which is predicted to have a
thioredoxin fold containing a single active cysteine.
Length = 135
Score = 30.9 bits (70), Expect = 1.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 567 NWRKHSLCWVDWNTGKIKLDYRPVHTEL 594
+ K WVDW G + D + + L
Sbjct: 108 LFNKQRPLWVDWEKGLVGTDKQSLKELL 135
>gnl|CDD|163241 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
anaerobic, A subunit. Members of this protein family
are the A subunit, product of the glpA gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 516
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 163 QALKNNAEFFIEYFALDLIINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYG 217
A ++ A F Y + +I G GV +TGE R A++V+ A G +
Sbjct: 137 DAQEHGARIF-TYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 30.0 bits (68), Expect = 1.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64
+ + DV+V+G+G GL A + + G + K P T A GG+
Sbjct: 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKE-PVFGGTTAFSGGVL 55
Score = 30.0 bits (68), Expect = 1.7
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGY----------------GRAYFSAT 224
++ G VG GE + + VVLA GG+ G + S
Sbjct: 240 LLTEGGRVVGARVID-AGGERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPV 298
Query: 225 SAHTCTGDGAGMVARAG 241
A TGDG + G
Sbjct: 299 PA-GNTGDGIRLAEAVG 314
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 30.3 bits (68), Expect = 1.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 3 NSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT 47
N S + D YDV ++G G G A + E+G K T
Sbjct: 102 NGFATSQSMNFSDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFT 146
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 30.1 bits (68), Expect = 1.7
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIA 64
D DV+V+G+G AGL A + A G K + K P T A GG
Sbjct: 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD-PVFGGTTAWSGGWM 58
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 29.4 bits (66), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 VVVGAGGAGLRATLGMAEKGFKTACITK 48
++ GAG AGL A L +A +G+ I K
Sbjct: 6 LIAGAGVAGLSAALELAARGWAVTIIEK 33
>gnl|CDD|181043 PRK07576, PRK07576, short chain dehydrogenase; Provisional.
Length = 264
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKT 43
DV+V GA G GM+ GFKT
Sbjct: 88 DVLVSGAAGNFPAPAAGMSANGFKT 112
>gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 29.0 bits (65), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTA-CITKVFPTRSHTVAAQGG 62
+D+ V+GAG G+RA A G K C P S ++ GG
Sbjct: 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGG 71
>gnl|CDD|181741 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 29.1 bits (66), Expect = 3.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 236 MVARAGLPLQDMEFVQFH 253
++AR GL LQD +F + H
Sbjct: 318 LLARNGLTLQDFDFYEIH 335
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 28.8 bits (64), Expect = 4.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
D +D +VVGAG AG A L MA G I +
Sbjct: 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 28.6 bits (64), Expect = 4.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YD++++G G AGL A + T I K
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK 35
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 28.6 bits (64), Expect = 4.8
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 12 TYVDHSYDVVVVGAGGAGL 30
TY D DVV+VGAG AGL
Sbjct: 89 TYADT--DVVIVGAGSAGL 105
>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 13 YVDHSYDVVVVGAGGAGLRA 32
S DV VVGAG +GL A
Sbjct: 8 AAASSKDVAVVGAGVSGLAA 27
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms.
Length = 380
Score = 28.3 bits (63), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRS 54
+DV+VVGAG G A +A+ G KT + + S
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37
>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4, ) and UbiF (which acts at position 5). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF.
Length = 385
Score = 28.3 bits (64), Expect = 5.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACI 46
D+V+VG G GL L +A G K A I
Sbjct: 1 DIVIVGGGMVGLALALALARSGLKIALI 28
>gnl|CDD|179932 PRK05092, PRK05092, PII uridylyl-transferase; Provisional.
Length = 931
Score = 28.3 bits (64), Expect = 6.3
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 208 LVVLATGGYGRA 219
L VLA GGYGR
Sbjct: 106 LAVLAVGGYGRG 117
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 28.3 bits (63), Expect = 6.4
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 15 DHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGG 62
YD+VV+G G G+ A A G K A V P+ T GG
Sbjct: 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGG 50
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 28.0 bits (63), Expect = 6.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46
YD+++VGAG GL A +G I
Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVI 29
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this
family, including sll0033 (crtH) of Synechocystis sp.
PCC 6803, catalyze a cis-trans isomerization of
carotenes to the all-trans lycopene, a reaction that
can also occur non-enzymatically in light through
photoisomerization.
Length = 493
Score = 28.2 bits (63), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKT 43
YD +V+G+G GL +A KG K
Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKV 26
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 27.8 bits (62), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDV V+G G +G A +A G +T + +
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLER 31
>gnl|CDD|165509 PHA03250, PHA03250, UL35; Provisional.
Length = 564
Score = 27.8 bits (62), Expect = 7.8
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 303 CMMMEIREGRGVGKSKDHIHLYLNHLDPAVL-QERLPGISESARIFAGVDVTRDPIPVIP 361
++ME R +G + + + YL PA L + P A +FA V R P
Sbjct: 439 SLIME-GAARQLGLTPEQLMAYL-EATPAPLGTDTEPDGEPEADLFADVSR-RPARPSSK 495
Query: 362 TVHYNMGG 369
+ GG
Sbjct: 496 DLERPPGG 503
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 28.0 bits (63), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFK 42
V V+GAG AGL A +A G
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHP 564
>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 27.7 bits (62), Expect = 8.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 17 SYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPT 52
S DVV+ G G GL G+ G + A + + P
Sbjct: 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 27.7 bits (61), Expect = 9.5
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 4 SSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
SS YD++V+G G G+ A A K A + K
Sbjct: 35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEK 79
>gnl|CDD|178949 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 27.5 bits (62), Expect = 9.6
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 20 VVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQGGIAASLANMTPDSWQWHL 79
++++GAGGA L + + G I R+ A + +A + L
Sbjct: 126 ILILGAGGAARAVILPLLDLGVAEITIV----NRTVERAEE--LAKLFGALGKAELDLEL 179
Query: 80 YDTIKGSD 87
+ + D
Sbjct: 180 QEELADFD 187
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,273,784
Number of extensions: 684881
Number of successful extensions: 1812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 151
Length of query: 611
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 512
Effective length of database: 3,855,281
Effective search space: 1973903872
Effective search space used: 1973903872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)