BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781043|ref|YP_003065456.1| succinate dehydrogenase
flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62]
(611 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 611
Score = 1273 bits (3294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/611 (100%), Positives = 611/611 (100%)
Query: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60
MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ
Sbjct: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60
Query: 61 GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE 120
GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE
Sbjct: 61 GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE 120
Query: 121 AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180
AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL
Sbjct: 121 AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180
Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA 240
IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA
Sbjct: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA 240
Query: 241 GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300
GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV
Sbjct: 241 GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300
Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360
SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI
Sbjct: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360
Query: 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV 420
PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV
Sbjct: 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV 420
Query: 421 FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480
FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD
Sbjct: 421 FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480
Query: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540
AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA
Sbjct: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540
Query: 541 EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD 600
EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD
Sbjct: 541 EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD 600
Query: 601 YSKIAPKARVY 611
YSKIAPKARVY
Sbjct: 601 YSKIAPKARVY 611
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 35.4 bits (80), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47
+DV+++G+G AG A +G A+KGF TA ++
Sbjct: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 30.8 bits (68), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46
YD++++G+G AG A + A+ GFK A +
Sbjct: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 30.4 bits (67), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT 47
++ SYDV+V+G G AG A A+ G TA IT
Sbjct: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 29.3 bits (64), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTA 44
+ YD+VV+GAG +G+R+ A+ G K A
Sbjct: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31
>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 261
Score = 28.1 bits (61), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAE-------KGFKTACITKVF-PTRSHTVAA 59
KS +Y+++ Y +V + A L LG+++ G + AC +F P+ +V
Sbjct: 69 KSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
Query: 60 QGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96
GG+ + L + WQ ++ S L +D +Q
Sbjct: 129 -GGVGSVLYDSDVVDWQ-----SLIDSFLLPSIDEVQ 159
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 27.3 bits (59), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 379 LDANS-KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVF------GRAAVIRASE 431
+DAN+ + P+RF I E G ++ G + + S +D V+F G + ++ +
Sbjct: 292 VDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERK 351
Query: 432 MIDKSSPIPSLDI 444
+ DK P++DI
Sbjct: 352 IADKRI-FPAMDI 363
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 26.9 bits (58), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50
D+ ++G G G +L + +KGF+ A K F
Sbjct: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDF 36
>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 345
Score = 25.0 bits (53), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL 524
D R L+D++ L HD S+++N+ +E L
Sbjct: 243 DKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 25.0 bits (53), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48
YDV VVG G AG + A+ K A I K
Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 23.9 bits (50), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 180 LIINSEGCCVGVVAWQ 195
L+++ +GCC+G++ +
Sbjct: 188 LVVDDDGCCIGLITVK 203
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,660
Number of Sequences: 1233
Number of extensions: 16788
Number of successful extensions: 54
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 13
length of query: 611
length of database: 328,796
effective HSP length: 79
effective length of query: 532
effective length of database: 231,389
effective search space: 123098948
effective search space used: 123098948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)