BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] (611 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 611 Score = 1273 bits (3294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 611/611 (100%), Positives = 611/611 (100%) Query: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ Sbjct: 1 MKNSSNLKSSYTYVDHSYDVVVVGAGGAGLRATLGMAEKGFKTACITKVFPTRSHTVAAQ 60 Query: 61 GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE 120 GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE Sbjct: 61 GGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQYLAMEAPQSVYELEHYGVPFSRNE 120 Query: 121 AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180 AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL Sbjct: 121 AGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQALKNNAEFFIEYFALDL 180 Query: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA 240 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA Sbjct: 181 IINSEGCCVGVVAWQLETGEIHRFSAKLVVLATGGYGRAYFSATSAHTCTGDGAGMVARA 240 Query: 241 GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300 GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV Sbjct: 241 GLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSKGERFMERYAPSAKDLASRDVV 300 Query: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI Sbjct: 301 SRCMMMEIREGRGVGKSKDHIHLYLNHLDPAVLQERLPGISESARIFAGVDVTRDPIPVI 360 Query: 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV 420 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV Sbjct: 361 PTVHYNMGGIPTNYWGEVLDANSKNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVV 420 Query: 421 FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD Sbjct: 421 FGRAAVIRASEMIDKSSPIPSLDISSCDRIMDRFDRLRHADGHVPTAALREKMQRAMQLD 480 Query: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA Sbjct: 481 AGVFRTQDSLSDGCRNLSCLWDEMADLKVHDRSLIWNSDLVETLELQNLMINAIATVYSA 540 Query: 541 EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD 600 EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD Sbjct: 541 EARKESRGSHAREDFKDGEFGGRDDVNWRKHSLCWVDWNTGKIKLDYRPVHTELLCGGVD 600 Query: 601 YSKIAPKARVY 611 YSKIAPKARVY Sbjct: 601 YSKIAPKARVY 611 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 35.4 bits (80), Expect = 0.003, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 23/30 (76%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 +DV+++G+G AG A +G A+KGF TA ++ Sbjct: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 30.8 bits (68), Expect = 0.071, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 20/29 (68%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACI 46 YD++++G+G AG A + A+ GFK A + Sbjct: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 30.4 bits (67), Expect = 0.091, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 21/34 (61%) Query: 14 VDHSYDVVVVGAGGAGLRATLGMAEKGFKTACIT 47 ++ SYDV+V+G G AG A A+ G TA IT Sbjct: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALIT 35 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 29.3 bits (64), Expect = 0.21, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 16 HSYDVVVVGAGGAGLRATLGMAEKGFKTA 44 + YD+VV+GAG +G+R+ A+ G K A Sbjct: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31 >gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 28.1 bits (61), Expect = 0.45, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 8 KSSYTYVDHSYDVVVVGAGGAGLRATLGMAE-------KGFKTACITKVF-PTRSHTVAA 59 KS +Y+++ Y +V + A L LG+++ G + AC +F P+ +V Sbjct: 69 KSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128 Query: 60 QGGIAASLANMTPDSWQWHLYDTIKGSDWLGDVDAIQ 96 GG+ + L + WQ ++ S L +D +Q Sbjct: 129 -GGVGSVLYDSDVVDWQ-----SLIDSFLLPSIDEVQ 159 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 27.3 bits (59), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Query: 379 LDANS-KNPERFAPGLMAIGEAGCASVHGANRLGSNSLIDLVVF------GRAAVIRASE 431 +DAN+ + P+RF I E G ++ G + + S +D V+F G + ++ + Sbjct: 292 VDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERK 351 Query: 432 MIDKSSPIPSLDI 444 + DK P++DI Sbjct: 352 IADKRI-FPAMDI 363 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 26.9 bits (58), Expect = 1.0, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 19 DVVVVGAGGAGLRATLGMAEKGFKTACITKVF 50 D+ ++G G G +L + +KGF+ A K F Sbjct: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDF 36 >gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] Length = 345 Score = 25.0 bits (53), Expect = 3.5, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 492 DGCRNLSCLWDEMADLKVHDRSLIWNSDLVETL 524 D R L+D++ L HD S+++N+ +E L Sbjct: 243 DKVRPKVFLFDDLITLSSHDLSIVFNNISLEVL 275 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 25.0 bits (53), Expect = 4.1, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 18 YDVVVVGAGGAGLRATLGMAEKGFKTACITK 48 YDV VVG G AG + A+ K A I K Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 23.9 bits (50), Expect = 8.0, Method: Compositional matrix adjust. Identities = 5/16 (31%), Positives = 13/16 (81%) Query: 180 LIINSEGCCVGVVAWQ 195 L+++ +GCC+G++ + Sbjct: 188 LVVDDDGCCIGLITVK 203 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.418 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 400,660 Number of Sequences: 1233 Number of extensions: 16788 Number of successful extensions: 54 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 13 length of query: 611 length of database: 328,796 effective HSP length: 79 effective length of query: 532 effective length of database: 231,389 effective search space: 123098948 effective search space used: 123098948 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)