HHsearch alignment for GI: 254781044 and conserved domain: CHL00014
>CHL00014 ndhI NADH dehydrogenase subunit I.
Probab=97.68 E-value=6.1e-06 Score=57.17 Aligned_cols=60 Identities=23% Similarity=0.509 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 66888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 165 ~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
T Consensus 59 ~~~dkCI~C~~C~~vCP~~~i~Vd-----------~~----~~~~~~kK~~~~y-~-ID~grCIFCG~CvEaCPtdA 118 (173)
T CHL00014 59 FEFDKCIACEVCVRVCPIDLPVVD-----------WK----LETDIRKKRLLNY-S-IDFGICIFCGNCVEYCPTNC 118 (173)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEC-----------CC----CCCCCCCCEEEEE-E-ECCCCCCCCCCCCCCCCCCC
T ss_conf 584117244369865977761633-----------55----6788885011467-7-56162130367110178680