HHsearch alignment for GI: 254781044 and conserved domain: PRK06273
>PRK06273 ferredoxin; Provisional.
Probab=96.12 E-value=0.00056 Score=45.01 Aligned_cols=93 Identities=19% Similarity=0.364 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC---CCCCH-HHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 0479998875421034666311011---12207-7765446688888731313228200102221011478899988516
Q gi|254781044|r 129 MSHFYSQHRSIEPWLKTVSPKPAKE---LLQSH-EDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI 204 (259)
Q Consensus 129 ~~~~~~~~~~~~p~~~~~~~~~~~e---~~qsp-ed~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~ 204 (259)
T Consensus 11 l~G~Y~NleRIi--fgsdr-~Td~Emr~~IL~G~Ve~~~~V~e~~CIGC~GCaNvCPT~AIe-M~~~ePVkite~~v--- 83 (163)
T PRK06273 11 ISGIYENLERII--FGSDR-YTSKEMRAEILTGNVELPKKVFEELCIGCGGCANACPTKAIE-MIPVEPVKITETYV--- 83 (163)
T ss_pred HHHHHHHHHHHE--ECCCC-CCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCEEEECCHH---
T ss_conf 987775145403--33675-330999999972875687667588643655500238877557-77656567411033---
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 88843138899962286652767664734551899
Q gi|254781044|r 205 DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK 239 (259)
Q Consensus 205 D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk 239 (259)
T Consensus 84 -------K~~iP~id----~ekCV~C~yCHDFCPv 107 (163)
T PRK06273 84 -------KEAIPKID----YEKCVYCLYCHDFCPV 107 (163)
T ss_pred -------HHCCCCCC----HHHEEEEEECCCCCHH
T ss_conf -------31266467----3320798873652438