HHsearch alignment for GI: 254781044 and conserved domain: PRK06273

>PRK06273 ferredoxin; Provisional.
Probab=96.12  E-value=0.00056  Score=45.01  Aligned_cols=93  Identities=19%  Similarity=0.364  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCC---CCCCH-HHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHC
Q ss_conf             0479998875421034666311011---12207-7765446688888731313228200102221011478899988516
Q gi|254781044|r  129 MSHFYSQHRSIEPWLKTVSPKPAKE---LLQSH-EDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI  204 (259)
Q Consensus       129 ~~~~~~~~~~~~p~~~~~~~~~~~e---~~qsp-ed~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~  204 (259)
T Consensus        11 l~G~Y~NleRIi--fgsdr-~Td~Emr~~IL~G~Ve~~~~V~e~~CIGC~GCaNvCPT~AIe-M~~~ePVkite~~v---   83 (163)
T PRK06273         11 ISGIYENLERII--FGSDR-YTSKEMRAEILTGNVELPKKVFEELCIGCGGCANACPTKAIE-MIPVEPVKITETYV---   83 (163)
T ss_pred             HHHHHHHHHHHE--ECCCC-CCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCEEEECCHH---
T ss_conf             987775145403--33675-330999999972875687667588643655500238877557-77656567411033---


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf             88843138899962286652767664734551899
Q gi|254781044|r  205 DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPK  239 (259)
Q Consensus       205 D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPk  239 (259)
T Consensus        84 -------K~~iP~id----~ekCV~C~yCHDFCPv  107 (163)
T PRK06273         84 -------KEAIPKID----YEKCVYCLYCHDFCPV  107 (163)
T ss_pred             -------HHCCCCCC----HHHEEEEEECCCCCHH
T ss_conf             -------31266467----3320798873652438