HHsearch alignment for GI: 254781044 and conserved domain: PRK12575
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional.
Probab=100.00 E-value=0 Score=577.01 Aligned_cols=234 Identities=50% Similarity=1.007 Sum_probs=225.5
Q ss_pred CCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 60799999863688888873689986426788116789999997328763884045677354430314361266321100
Q gi|254781044|r 25 KNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDM 104 (259)
Q Consensus 25 ~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~ 104 (259)
T Consensus 2 ~~~~tl~I~R~~P~~d~~p~~~~y~v~~~~~~~tvLd~L~~ik-~~D~tLaFr~sCR~gICGSCam~ING~~~LAC~t~v 80 (235)
T PRK12575 2 ADTRILDIYRYDPDDGRAPRMQRYELAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGVCGSDAMNINGRNGLACVTSM 80 (235)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEH
T ss_conf 9727999983089999986068999586889871999999998-249983664578899787787588998665478786
Q ss_pred HCCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEE
Q ss_conf 00478518986489804411245104799988754210346663110111220777654466888887313132282001
Q gi|254781044|r 105 KDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYW 184 (259)
Q Consensus 105 ~~~~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~~~e~~qsped~~~~~~~~~CI~CG~C~saCP~~~ 184 (259)
T Consensus 81 ~~~~~~i~IePl~~fpVIkDLVVD~~~~~~~~~~v~p~~~~~~~~~~~e~~~~p~~~~~~~~~~~CI~Cg~C~saCp~~~ 160 (235)
T PRK12575 81 QALPREIVLRPLPGLPVVRDLIVDMTSFFNQYHSVRPYLVNEGVPPERERLQTPQEREQLDGLYECILCACCSSACPSYW 160 (235)
T ss_pred HHCCCCEEEEECCCCCCCCCCEECCHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66578559998999962223266039999875522438614899885123379889998872887550333886646610
Q ss_pred ECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 022210114788999885168884313889996228665276766473455189978889999999999986129
Q gi|254781044|r 185 WNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259 (259)
Q Consensus 185 ~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~rkl 259 (259)
T Consensus 161 ~~~~~f~GP~al~~a~r~~~D~RD~~~~erl~~l~~~~g~~~C~~~~~C~~vCPK~I~p~~~I~~Lr~~~~~~~~ 235 (235)
T PRK12575 161 WNPDKFVGPAGLLQAYRFIVDSRDDASAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARRAV 235 (235)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 085356086888877662158631459999998417898508988588246287899989999999999997309