HHsearch alignment for GI: 254781044 and conserved domain: TIGR00314
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=98.26 E-value=6.3e-07 Score=63.29 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH-CCCCCCCCCCCCCCHHHHCC
Q ss_conf 76544668888873131322820010222101147889998851688843138899962-28665276766473455189
Q gi|254781044|r 160 DRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNL-EDPFRLYRCHTIMNCTQSCP 238 (259)
Q Consensus 160 d~~~~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l-~~~~gi~~C~~C~~C~~vCP 238 (259)
T Consensus 400 ~~~~~E~a~~CT~Cg~C~~~CP~~l~v~------~am~~A~----~tGd~s---kL~~~~~~-----~C~aCgrCEq~Cp 461 (795)
T TIGR00314 400 EEELMELAKKCTQCGNCTRACPNSLRVK------EAMAKAE----KTGDLS---KLEELLEE-----VCYACGRCEQVCP 461 (795)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHH------HHHHHHH----HCCCHH---HHHHHHHH-----HCCCCCCCHHCCC
T ss_conf 7899999983678877544587865179------9999997----348866---89999998-----4455675130278
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 978889999999999986
Q gi|254781044|r 239 KGLNPAKAIAKIKMMLLD 256 (259)
Q Consensus 239 kgI~~~~~I~~LRr~~v~ 256 (259)
T Consensus 462 knipIv~m~~~a~~~~~~ 479 (795)
T TIGR00314 462 KNIPIVSMVTKAGEDRLK 479 (795)
T ss_pred CCCCEEEHHHHHHHHHHH
T ss_conf 988245132466477754