HHsearch alignment for GI: 254781044 and conserved domain: TIGR00384
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=100.00 E-value=0 Score=325.45 Aligned_cols=219 Identities=45% Similarity=0.963 Sum_probs=203.5
Q ss_pred EEEECCCCCCC-CCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC
Q ss_conf 98636888888-73689986426788-11678999999732876388404567735443031436126632110000478
Q gi|254781044|r 32 IYRWNPDNKGN-PCMDTYYVDLDNCG-PMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG 109 (259)
Q Consensus 32 i~R~~p~~~~~-~~~~~y~v~~~~~~-~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~ 109 (259)
T Consensus 1 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~c~~~~cg~c~~~~~~~~~l~c~~~~~~~~~ 79 (236)
T TIGR00384 1 VLRFNPDVDEAKPHLESYELPADE-GTLTLLDALGYIKDELDPSLAFRKSCRNGICGSCALKVNGKPRLACKTKVEDLGG 79 (236)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCC
T ss_conf 955577764101222210233334-3257899999875420321134544321001200000067420122322333101
Q ss_pred -----------CEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -----------5189864898044112451047999887542103466631-101-112207776544668888873131
Q gi|254781044|r 110 -----------AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPK-PAK-ELLQSHEDRQKIDGLYECVMCACC 176 (259)
Q Consensus 110 -----------~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~-~~~-e~~qsped~~~~~~~~~CI~CG~C 176 (259)
T Consensus 80 ~~~~~~~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~py~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~c~~c 159 (236)
T TIGR00384 80 PLKESNEEGTGVLTIEPLGNLPVIKDLVVDLGPFYEKLEAVKPYLIRKGRPEPGGKELLQTPEEREKLDGLSGCILCGAC 159 (236)
T ss_pred CHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 00010002565268620677521455553136788877655434422577732002343045788876666667777555
Q ss_pred HHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHH
Q ss_conf 3228200102221011478899988516888431388999622-86652767664734551899788-899999999
Q gi|254781044|r 177 STSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLE-DPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIK 251 (259)
Q Consensus 177 ~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~-~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LR 251 (259)
T Consensus 160 ~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~~p~~~~~~~~ 236 (236)
T TIGR00384 160 YSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLDPPGDAIEKLK 236 (236)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 43202000353101246899999887404433102456765301212200123344444421221321356774139