HHsearch alignment for GI: 254781044 and conserved domain: TIGR00384

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=100.00  E-value=0  Score=325.45  Aligned_cols=219  Identities=45%  Similarity=0.963  Sum_probs=203.5

Q ss_pred             EEEECCCCCCC-CCEEEEEEECCCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHCCCC
Q ss_conf             98636888888-73689986426788-11678999999732876388404567735443031436126632110000478
Q gi|254781044|r   32 IYRWNPDNKGN-PCMDTYYVDLDNCG-PMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLACVKDMKDIKG  109 (259)
Q Consensus        32 i~R~~p~~~~~-~~~~~y~v~~~~~~-~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC~t~~~~~~~  109 (259)
T Consensus         1 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~c~~~~cg~c~~~~~~~~~l~c~~~~~~~~~   79 (236)
T TIGR00384         1 VLRFNPDVDEAKPHLESYELPADE-GTLTLLDALGYIKDELDPSLAFRKSCRNGICGSCALKVNGKPRLACKTKVEDLGG   79 (236)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCC
T ss_conf             955577764101222210233334-3257899999875420321134544321001200000067420122322333101


Q ss_pred             -----------CEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             -----------5189864898044112451047999887542103466631-101-112207776544668888873131
Q gi|254781044|r  110 -----------AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPK-PAK-ELLQSHEDRQKIDGLYECVMCACC  176 (259)
Q Consensus       110 -----------~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~-~~~-e~~qsped~~~~~~~~~CI~CG~C  176 (259)
T Consensus        80 ~~~~~~~~~~~~~~~~p~~~~~~~~dl~~~~~~~~~~~~~~~py~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~c~~c  159 (236)
T TIGR00384        80 PLKESNEEGTGVLTIEPLGNLPVIKDLVVDLGPFYEKLEAVKPYLIRKGRPEPGGKELLQTPEEREKLDGLSGCILCGAC  159 (236)
T ss_pred             CHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             00010002565268620677521455553136788877655434422577732002343045788876666667777555


Q ss_pred             HHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCHHHHCCCCCC-HHHHHHHHH
Q ss_conf             3228200102221011478899988516888431388999622-86652767664734551899788-899999999
Q gi|254781044|r  177 STSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLE-DPFRLYRCHTIMNCTQSCPKGLN-PAKAIAKIK  251 (259)
Q Consensus       177 ~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~-~~~gi~~C~~C~~C~~vCPkgI~-~~~~I~~LR  251 (259)
T Consensus       160 ~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~~p~~~~~~~~  236 (236)
T TIGR00384       160 YSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLDPPGDAIEKLK  236 (236)
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf             43202000353101246899999887404433102456765301212200123344444421221321356774139