HHsearch alignment for GI: 254781044 and conserved domain: TIGR00403
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=96.46 E-value=0.00048 Score=45.45 Aligned_cols=61 Identities=21% Similarity=0.467 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r 164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL 241 (259)
Q Consensus 164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI 241 (259)
T Consensus 59 hfefdkCiaCevCvrvCPi~lP~v-----------dW~~~k----~~k~k~l~~ysidfG--vCifCGnCveyCPtnC 119 (187)
T TIGR00403 59 HFEFDKCIACEVCVRVCPINLPVV-----------DWEFEK----AIKKKQLKNYSIDFG--VCIFCGNCVEYCPTNC 119 (187)
T ss_pred EEEECCEEEEEEEEEEECCCCCEE-----------CHHHHH----HHHHHHHHHHHHHCC--EEEEECCCCCCCCCCC
T ss_conf 653133344234567621436312-----------045554----677767753000000--4676447210057530