HHsearch alignment for GI: 254781044 and conserved domain: TIGR00403

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=96.46  E-value=0.00048  Score=45.45  Aligned_cols=61  Identities=21%  Similarity=0.467  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             466888887313132282001022210114788999885168884313889996228665276766473455189978
Q gi|254781044|r  164 IDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGL  241 (259)
Q Consensus       164 ~~~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI  241 (259)
T Consensus        59 hfefdkCiaCevCvrvCPi~lP~v-----------dW~~~k----~~k~k~l~~ysidfG--vCifCGnCveyCPtnC  119 (187)
T TIGR00403        59 HFEFDKCIACEVCVRVCPINLPVV-----------DWEFEK----AIKKKQLKNYSIDFG--VCIFCGNCVEYCPTNC  119 (187)
T ss_pred             EEEECCEEEEEEEEEEECCCCCEE-----------CHHHHH----HHHHHHHHHHHHHCC--EEEEECCCCCCCCCCC
T ss_conf             653133344234567621436312-----------045554----677767753000000--4676447210057530