HHsearch alignment for GI: 254781044 and conserved domain: TIGR02936

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=97.82  E-value=2.9e-06  Score=59.22  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=38.6

Q ss_pred             HHHHHHHHCCCHHHCC--CEEECC----CCCCCHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf             6888887313132282--001022----210114788999885168884313--88999622866527676647345518
Q gi|254781044|r  166 GLYECVMCACCSTSCP--SYWWNS----DRYLGPAILLQAYRWLIDSRDEFQ--GERLDNLEDPFRLYRCHTIMNCTQSC  237 (259)
Q Consensus       166 ~~~~CI~CG~C~saCP--~~~~~~----~~flGP~~l~~a~r~~~D~rD~~~--~erl~~l~~~~gi~~C~~C~~C~~vC  237 (259)
T Consensus        19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~---------de~d~dDdE~~rkvM~~~~--~~~CIGC~AC~rVC   87 (96)
T TIGR02936        19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSD---------DEEDDDDDEIERKVMVLAN--PGNCIGCGACARVC   87 (96)
T ss_pred             CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC---------CCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCC
T ss_conf             431075454631417867642221246785763888---------8733468873442777428--77850423477056


Q ss_pred             CCCC
Q ss_conf             9978
Q gi|254781044|r  238 PKGL  241 (259)
Q Consensus       238 PkgI  241 (259)
T Consensus        88 Pk~C   91 (96)
T TIGR02936        88 PKKC   91 (96)
T ss_pred             CCCC
T ss_conf             8863