HHsearch alignment for GI: 254781044 and conserved domain: TIGR02936
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=97.82 E-value=2.9e-06 Score=59.22 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCHHHCC--CEEECC----CCCCCHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCCCCCCCCCCHHHHC
Q ss_conf 6888887313132282--001022----210114788999885168884313--88999622866527676647345518
Q gi|254781044|r 166 GLYECVMCACCSTSCP--SYWWNS----DRYLGPAILLQAYRWLIDSRDEFQ--GERLDNLEDPFRLYRCHTIMNCTQSC 237 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP--~~~~~~----~~flGP~~l~~a~r~~~D~rD~~~--~erl~~l~~~~gi~~C~~C~~C~~vC 237 (259)
T Consensus 19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~---------de~d~dDdE~~rkvM~~~~--~~~CIGC~AC~rVC 87 (96)
T TIGR02936 19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSD---------DEEDDDDDEIERKVMVLAN--PGNCIGCGACARVC 87 (96)
T ss_pred CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC---------CCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCC
T ss_conf 431075454631417867642221246785763888---------8733468873442777428--77850423477056
Q ss_pred CCCC
Q ss_conf 9978
Q gi|254781044|r 238 PKGL 241 (259)
Q Consensus 238 PkgI 241 (259)
T Consensus 88 Pk~C 91 (96)
T TIGR02936 88 PKKC 91 (96)
T ss_pred CCCC
T ss_conf 8863