HHsearch alignment for GI: 254781044 and conserved domain: TIGR03379
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=99.28 E-value=2.5e-12 Score=96.83 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=55.7
Q ss_pred HHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHH-HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 688888731313228200102221011478899-9885168884313889996228665276766473455189978889
Q gi|254781044|r 166 GLYECVMCACCSTSCPSYWWNSDRYLGPAILLQ-AYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPA 244 (259)
Q Consensus 166 ~~~~CI~CG~C~saCP~~~~~~~~flGP~~l~~-a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~ 244 (259)
T Consensus 3 ~~d~Ci~CG~C~~~CP~~~~~~~-~~g~~~~~~~g~~~~l~~--------~~~~--~~~l~~C~~C~~C~~~CP~gV~~~ 71 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKANPL-YPGPKQAGPDGERLRLKS--------AELY--DEALKYCTNCKRCEVACPSDVKIG 71 (397)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCC-CCCHHHCCHHHHHHHHCC--------CHHH--HHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 31227588988373868545788-887254084467665036--------4434--156163827688365387999878
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999998612
Q gi|254781044|r 245 KAIAKIKMMLLDRK 258 (259)
Q Consensus 245 ~~I~~LRr~~v~rk 258 (259)
T Consensus 72 ~li~~~R~~~~~~~ 85 (397)
T TIGR03379 72 DIIARARNKYQKKK 85 (397)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998726