HHsearch alignment for GI: 254781044 and conserved domain: cd00207
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.30 E-value=4.8e-07 Score=64.03 Aligned_cols=59 Identities=27% Similarity=0.582 Sum_probs=45.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC------------------CCCCCCCCCCHHCC
Q ss_conf 899864267881167899999973287638840456773544303143------------------61266321100004
Q gi|254781044|r 46 DTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNID------------------GTNTLACVKDMKDI 107 (259)
Q Consensus 46 ~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iN------------------G~~~LAC~t~~~~~ 107 (259)
T Consensus 8 ~~~~~~v~~-~~tlL~~~~~-~-g----i~~~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~- 79 (84)
T cd00207 8 SGVEVEVPE-GETLLDAARE-A-G----IDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD- 79 (84)
T ss_pred CEEEEEECC-CCCHHHHHHH-C-C----CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCEEEEEECEECC-
T ss_conf 638999897-9729999998-4-9----996613079856889789978827467554568778628879841398888-
Q ss_pred CCCEEEE
Q ss_conf 7851898
Q gi|254781044|r 108 KGAIAVY 114 (259)
Q Consensus 108 ~~~i~ie 114 (259)
T Consensus 80 --d~~ie 84 (84)
T cd00207 80 --GLVIE 84 (84)
T ss_pred --CEEEC
T ss_conf --81889