HHsearch results for GI: 254781044 and protein with PDBid: 2h88_B
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 1zoy_B* 1zp0_B*
Probab=100.00 E-value=0 Score=518.62 Aligned_cols=237 Identities=64% Similarity=1.215 Sum_probs=222.7
Q ss_pred CCCCCEEEEEEEEECCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCC
Q ss_conf 788607999998636888-8887368998642678811678999999732876388404567735443031436126632
Q gi|254781044|r 22 TGEKNLKEYRIYRWNPDN-KGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCGMNIDGTNTLAC 100 (259)
Q Consensus 22 ~~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik~~~D~sl~fr~sCr~giCGsCa~~iNG~~~LAC 100 (259)
..+++++||+||||||+. +.+||||+|+|++++.+|||||+|++||+++||||+||++||+||||||||+|||+++|||
T Consensus 6 ~~~~~~~~l~I~R~~p~~~~~~~~~~~y~v~~~~~~~tvLdaL~~Ik~~~d~sl~fr~~Cr~giCGsCam~ING~~~LAC 85 (252)
T 2h88_B 6 AATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLAC 85 (252)
T ss_dssp --CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGG
T ss_pred CCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCE
T ss_conf 77663689999986899999886489999788889866999999997207996488727877998740899899061233
Q ss_pred CCCHHCC-CCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1100004-7851898648980441124510479998875421034666311--011122077765446688888731313
Q gi|254781044|r 101 VKDMKDI-KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSPKP--AKELLQSHEDRQKIDGLYECVMCACCS 177 (259)
Q Consensus 101 ~t~~~~~-~~~i~iePl~~~pVikDLvVD~~~~~~~~~~~~p~~~~~~~~~--~~e~~qsped~~~~~~~~~CI~CG~C~ 177 (259)
+|++.++ +++++||||++||||||||||+++||+++++++||+.+....+ ..+.+|+++++.+++.+++||+||+|.
T Consensus 86 ~t~~~~~~~~~i~iePl~~fpVIkDLvVD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ci~C~~C~ 165 (252)
T 2h88_B 86 TKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCS 165 (252)
T ss_dssp GSBCCCCTTSCEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTG
T ss_pred EEEEECCCCCCEEEECCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 67600056661467128998130257203658786655114402468888864213458988999999862505541302
Q ss_pred HHCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 22820010222101147889998851688843138899962286652767664734551899788899999999999861
Q gi|254781044|r 178 TSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257 (259)
Q Consensus 178 saCP~~~~~~~~flGP~~l~~a~r~~~D~rD~~~~erl~~l~~~~gi~~C~~C~~C~~vCPkgI~~~~~I~~LRr~~v~r 257 (259)
++||++..++++|+||++++++|||+.|+||+...+|++.+.+++|+|+|++|++|+++||+||+|+++|..||++++++
T Consensus 166 ~~Cp~~~~~~~~f~GP~~~~~~~r~~~d~rd~~~~erl~~~~~~~g~~~C~~c~~C~~vCPkgI~~~~~I~~lrr~~~~~ 245 (252)
T 2h88_B 166 TSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY 245 (252)
T ss_dssp GGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHC
T ss_pred HCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 00553111860126999999999756587630089999985178881279783852234799999799999999999986
Q ss_pred C
Q ss_conf 2
Q gi|254781044|r 258 K 258 (259)
Q Consensus 258 k 258 (259)
|
T Consensus 246 k 246 (252)
T 2h88_B 246 K 246 (252)
T ss_dssp C
T ss_pred H
T ss_conf 3