PSIBLAST alignment of GI: 254781044 and protein with PDB id: 1nek

gi|28948819|pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Ubiquinone Bound Length = 238
>gi|28948823|pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Dinitrophenol-17 Inhibitor Co-Crystallized At The Ubiquinone Binding Site Length = 238
 Score =  245 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 122/233 (52%), Positives = 158/233 (67%), Gaps = 4/233 (1%)

Query: 29  EYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSC 88
           E+ IYR+NPD    P M  Y ++ D    M+L   L    + DP+L+ RRSCREG+CGS 
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63

Query: 89  GMNIDGTNTLACVKDMKDIKGA---IAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL-K 144
           G+N++G N LAC+  +  +      I + PLP + VI+DLVVDM  FY+Q+  I+P+L  
Sbjct: 64  GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLN 123

Query: 145 TVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI 204
                PA+E LQ  E R+K+DGLYEC++CACCSTSCPS+WWN D+++GPA LL AYR+LI
Sbjct: 124 NGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLI 183

Query: 205 DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257
           DSRD     RLD L D F ++RCH+IMNC   CPKGLNP +AI  IK MLL R
Sbjct: 184 DSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236