PSIBLAST alignment of GI: 254781044 and protein with PDB id: 1nek
gi|28948819|pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Ubiquinone Bound Length = 238
>gi|28948823|pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Dinitrophenol-17 Inhibitor Co-Crystallized At The Ubiquinone Binding Site Length = 238
Score = 245 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 122/233 (52%), Positives = 158/233 (67%), Gaps = 4/233 (1%)
Query: 29 EYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSC 88
E+ IYR+NPD P M Y ++ D M+L L + DP+L+ RRSCREG+CGS
Sbjct: 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSD 63
Query: 89 GMNIDGTNTLACVKDMKDIKGA---IAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL-K 144
G+N++G N LAC+ + + I + PLP + VI+DLVVDM FY+Q+ I+P+L
Sbjct: 64 GLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLN 123
Query: 145 TVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLI 204
PA+E LQ E R+K+DGLYEC++CACCSTSCPS+WWN D+++GPA LL AYR+LI
Sbjct: 124 NGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLI 183
Query: 205 DSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257
DSRD RLD L D F ++RCH+IMNC CPKGLNP +AI IK MLL R
Sbjct: 184 DSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236