RPSBLAST alignment of GI: 254781044 and protein with PDBid: 2wdq

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* Length = 238

 Score =  224 bits (572), Expect = 2e-59
 Identities = 125/234 (53%), Positives = 162/234 (69%), Gaps = 6/234 (2%)

Query: 29  EYRIYRWNPDNKGNPCMDTYYVDLDNC-GPMVLDGLLYIKNKIDPTLTLRRSCREGICGS 87
           E+ IYR+NPD    P M  Y ++ D     M+LD L+ +K K DP+L+ RRSCREG+CGS
Sbjct: 4   EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGS 62

Query: 88  CGMNIDGTNTLACVKDMKDI---KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLK 144
            G+N++G N LAC+  +  +      I + PLP + VI+DLVVDM  FY+Q+  I+P+L 
Sbjct: 63  DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122

Query: 145 TVSPK-PAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWL 203
                 PA+E LQ  E R+K+DGLYEC++CACCSTSCPS+WWN D+++GPA LL AYR+L
Sbjct: 123 NNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFL 182

Query: 204 IDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257
           IDSRD     RLD L D F ++RCH+IMNC   CPKGLNP +AI  IK MLL R
Sbjct: 183 IDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236