RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781044|ref|YP_003065457.1| succinate dehydrogenase
iron-sulfur subunit [Candidatus Liberibacter asiaticus str. psy62]
(259 letters)
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
reductace, succinate dehydrogenase, complex II, quinol,
quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli}
SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B*
3cir_B*
Length = 243
Score = 248 bits (633), Expect = 1e-66
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 4/232 (1%)
Query: 24 EKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREG 83
KNLK + R+NP+ P Y V D +LD L YIK+ + P L+ R SCR
Sbjct: 3 MKNLK-IEVVRYNPEVDTAPHSAFYEVPYD-ATTSLLDALGYIKDNLAPDLSYRWSCRMA 60
Query: 84 ICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL 143
ICGSCGM ++ LAC ++D + V L + + +DLVVDM+HF +I+P++
Sbjct: 61 ICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYI 120
Query: 144 KTVSPK-PAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRW 202
S +Q+ K C+ C C +CP + N + ++GPA + A+R+
Sbjct: 121 IGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRY 179
Query: 203 LIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMML 254
DSRD + ER+ L ++ C + C++ CPK ++PA AI + K+
Sbjct: 180 NEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVES 231
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein,
heme protein, iron sulfur protein, oxidoreductase, redox
enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB:
1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 1zoy_B* 1zp0_B*
Length = 252
Score = 241 bits (615), Expect = 1e-64
Identities = 154/243 (63%), Positives = 189/243 (77%), Gaps = 4/243 (1%)
Query: 20 APTGEKNLKEYRIYRWNPDNKG-NPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRR 78
A +K++ IYRW+PD G P M TY VDL+ CGPMVLD L+ IKN++D TLT RR
Sbjct: 4 AAAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRR 63
Query: 79 SCREGICGSCGMNIDGTNTLACVKDMKD-IKGAIAVYPLPHMSVIKDLVVDMSHFYSQHR 137
SCREGICGSC MNI G NTLAC K + + +YPLPHM V+KDLV D+S+FY+Q++
Sbjct: 64 SCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYK 123
Query: 138 SIEPWL--KTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAI 195
SIEP+L K S + ++ LQS EDRQK+DGLYEC++CACCSTSCPSYWWN D+YLGPA+
Sbjct: 124 SIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAV 183
Query: 196 LLQAYRWLIDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLL 255
L+QAYRW+IDSRD++ ERL L+DPF LYRCHTIMNCT++CPKGLNP KAIA+IK M+
Sbjct: 184 LMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 243
Query: 256 DRK 258
K
Sbjct: 244 TYK 246
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate
dehydrogenase activity, cell inner membrane,
tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
{Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B*
2wdv_B*
Length = 238
Score = 224 bits (572), Expect = 2e-59
Identities = 125/234 (53%), Positives = 162/234 (69%), Gaps = 6/234 (2%)
Query: 29 EYRIYRWNPDNKGNPCMDTYYVDLDNC-GPMVLDGLLYIKNKIDPTLTLRRSCREGICGS 87
E+ IYR+NPD P M Y ++ D M+LD L+ +K K DP+L+ RRSCREG+CGS
Sbjct: 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGS 62
Query: 88 CGMNIDGTNTLACVKDMKDI---KGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLK 144
G+N++G N LAC+ + + I + PLP + VI+DLVVDM FY+Q+ I+P+L
Sbjct: 63 DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122
Query: 145 TVSPK-PAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWL 203
PA+E LQ E R+K+DGLYEC++CACCSTSCPS+WWN D+++GPA LL AYR+L
Sbjct: 123 NNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFL 182
Query: 204 IDSRDEFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDR 257
IDSRD RLD L D F ++RCH+IMNC CPKGLNP +AI IK MLL R
Sbjct: 183 IDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 189 bits (480), Expect = 7e-49
Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 8/235 (3%)
Query: 31 RIYRWNPDNKG-NPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREGICGSCG 89
R+++++P + P Y ++ + + L I+ DP L CR GICGSCG
Sbjct: 8 RVFKYDPQSAVSKPHFQEYKIE-EAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCG 66
Query: 90 MNIDGTNTLACVKDMKDIKG-AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWLKTVSP 148
M I+G +LAC KD + I + PLP +IKDL VD ++++
Sbjct: 67 MMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQK 126
Query: 149 KP---AKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLID 205
+ E E Q++ L C+ C CC +C + D ++G A L + R++ID
Sbjct: 127 EHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVRFMID 185
Query: 206 SRDEFQGE-RLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMMLLDRKI 259
DE E + + D ++ C T++ C CPK L IA ++ ++ +
Sbjct: 186 PHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVNM 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 3e-07
Identities = 32/192 (16%), Positives = 55/192 (28%), Gaps = 78/192 (40%)
Query: 96 NTLACVKDMKDIKGAIAVYPLPHMSVIKDLVV--------------DMSHFYSQHRSIEP 141
NT ++++D+ Y ++ DL+ D ++Q +I
Sbjct: 165 NTDDYFEELRDL---YQTYH----VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 142 WLKTVSPKPAKE-------------LLQ-SHEDRQKIDGLYECVMCACCSTSCPSYWWNS 187
WL+ S P K+ ++Q +H Y V
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAH---------Y-VVTA-------------- 253
Query: 188 DRYLG--PAILLQAYRW-------LI--------DSRDEFQGERLDNLEDPFRL-YRCHT 229
+ LG P L + L+ DS + F + F + RC+
Sbjct: 254 -KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 230 IMNCTQSCPKGL 241
T P L
Sbjct: 313 AYPNTSLPPSIL 324
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 31.1 bits (70), Expect = 0.23
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 80 CREGICGSCGMNIDGTNTLACV 101
C +G CG+C + +DG AC+
Sbjct: 40 CGKGQCGACTVILDGKVVRACI 61
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 160
Score = 29.9 bits (67), Expect = 0.66
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 77 RRSCREGICGSCGMNIDGTNTLACVKDMKDIKG 109
+ C EG CG+C + +G C
Sbjct: 39 KEGCSEGECGACTVIFNGDPVTTCCMLAGQADE 71
>3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6;
structural genomics consortium, SGC, alternative
splicing, chromatin regulator; 1.75A {Homo sapiens}
Length = 336
Score = 29.5 bits (65), Expect = 0.70
Identities = 24/207 (11%), Positives = 49/207 (23%), Gaps = 22/207 (10%)
Query: 24 EKNLKEYRIYRWNPDNKGNPCMDTYYVDLDNCGPMVLDGLLYIKNKIDPTLTLRRSCREG 83
E + +Y ++ +P D D Y K P
Sbjct: 123 ESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPR 182
Query: 84 ICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQHRSIEPWL 143
++ GT+ + ++G P + + + V +Q W
Sbjct: 183 SGTGIHIDPLGTSAWNAL-----VQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWF 237
Query: 144 KTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSYWWNSDRYLGPAI-------- 195
+ P+ E + + P WW+ L I
Sbjct: 238 NVIYPRTQLPTWPPEFKP------LEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFAS 291
Query: 196 ---LLQAYRWLIDSRDEFQGERLDNLE 219
+ + R + + L+
Sbjct: 292 STNFPVVWHKTVRGRPKLSRKWYRILK 318
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A*
Length = 907
Score = 29.6 bits (65), Expect = 0.70
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 77 RRSCREGICGSCGMNIDGTNTLACV 101
+ C +G CG+C + +DG ACV
Sbjct: 37 KVGCEQGQCGACSVILDGKVVRACV 61
>2a2m_A Hypothetical protein BT3146; NP_812058.1, structural genomics,
joint center for structural genomics, JCSG; 1.88A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: a.132.1.3
PDB: 2a2o_A
Length = 258
Score = 29.3 bits (65), Expect = 0.92
Identities = 13/132 (9%), Positives = 30/132 (22%), Gaps = 12/132 (9%)
Query: 110 AIAVYPLPHMSVIKDLVVDMSHFYSQHRSIE-----PWLKTVSPKPAKELLQSHEDRQKI 164
A A ++ + + + + + P + +E
Sbjct: 103 ATAATCAQDETLREFFKAKAKSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEAYVAG 162
Query: 165 DGLYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQ------GERLDNL 218
+ + W ++ G YR+ I+ G L+
Sbjct: 163 SLASPYMCVVMLPC-EYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQMGNMLEQY 221
Query: 219 EDPFRLYRCHTI 230
D + I
Sbjct: 222 RDKIDEDKAVEI 233
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain, alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 28.9 bits (64), Expect = 1.1
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 46 DTYYVDLDNCGP--MVLDGLLYIKNKIDPTLTLRR--SCREGICGSCGMNIDGTNT---L 98
D Y CG M+ +++ +C G C +C + +
Sbjct: 192 DALYT----CGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALK 247
Query: 99 ACV 101
C
Sbjct: 248 VCE 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 17/46 (36%)
Query: 209 EFQGERLDNLEDPFRLYRCHTIMNCTQSCPKGLNPAKAIAKIKMML 254
E Q L L+ +LY S P A+A IK +
Sbjct: 18 EKQA--LKKLQASLKLY-------ADDSAP-------ALA-IKATM 46
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, copper,
molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN
FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP:
a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A*
1zxi_A*
Length = 166
Score = 28.8 bits (64), Expect = 1.4
Identities = 12/58 (20%), Positives = 19/58 (32%)
Query: 79 SCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQH 136
C CG+C +++DG + +C GA + L F H
Sbjct: 41 GCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMH 98
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
X-RAY crystallography, hydrogene metabolism, periplasm;
1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1
d.58.1.5 PDB: 1e08_A* 1gx7_A*
Length = 421
Score = 28.7 bits (64), Expect = 1.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 160 DRQKIDGLYECVMCACCSTSCP 181
+ I + C+ C C T CP
Sbjct: 56 EPHSIPHIEACINCGQCLTHCP 77
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 77 RRSCREGICGSCGMNIDGTNTLACVKDMKDIKG 109
C CG+C ++IDG + +C G
Sbjct: 39 HIGCETSHCGACTVDIDGRSVKSCTHLAVQCDG 71
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 28.0 bits (61), Expect = 2.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 79 SCREGICGSC 88
SC G CGSC
Sbjct: 271 SCESGTCGSC 280
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 27.8 bits (60), Expect = 2.8
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 31 RIYRWNPDNKGNPCMDTYYVDLDNCGPMVL----DGLLYIKNKIDPTLTLRRSCREGICG 86
I++ NP+ K P + DG L++ D T
Sbjct: 67 NIFKINPETKEI----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122
Query: 87 SCGMNIDGTNTLACVKDM 104
+ I+ +T C+ DM
Sbjct: 123 NLQDIIEDLSTAYCIDDM 140
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
{Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1
d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A*
1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C*
3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A*
1fiq_A* 3eub_A* 3etr_A*
Length = 1332
Score = 27.7 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 60 LDGLLYIKNKIDPTLTL----RR---------SCREGICGSC 88
++G ++ DP TL RR C EG CG+C
Sbjct: 10 VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGAC 51
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein,
PSI, protein structure initiative; 2.20A {Enterococcus
faecalis V583} SCOP: a.23.6.1
Length = 104
Score = 27.5 bits (61), Expect = 3.5
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 145 TVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSCPSY 183
+S K A +LL+ +D ++I L + C + C ++
Sbjct: 7 GISKKFAIQLLE--DDAERIKMLIRNQKNSLCISQCKAF 43
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 227
Score = 27.0 bits (59), Expect = 4.1
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 125 LVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACC 176
VV + R + +K VS KP E++ ++ + G
Sbjct: 35 TVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAK 86
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; 2.11A {Bacteroides fragilis}
Length = 254
Score = 26.9 bits (59), Expect = 4.4
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 89 GMNIDGTNTLACVKDMKDIKGAIAVYPL-------PHMSVIKD 124
GMN + +++C+ +K++K + + P H+ + D
Sbjct: 1 GMNKEVDLSVSCLGKVKELKYDVIILPWGATEPHNLHLPYLTD 43
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 27.0 bits (59), Expect = 5.2
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 77 RRSCREGICGSCGMNIDGTNTLACVKDMKDIKGAIAVYPLPHMSVIKDLVVDMSHFYSQH 136
+ C +G+CGSC + IDG +C+ +G ++ + +S + L F H
Sbjct: 45 KIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGC-SIETVEGLSQGEKLNALQDSFRRHH 103
Query: 137 RSIEPWLKTVSPKPAKELLQSHED--RQKIDGLYECVMCAC 175
+ A+ +L + R ++ + +C C
Sbjct: 104 ALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRC 144
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 26.6 bits (58), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 143 LKTVSPKPAKELLQSHEDRQKID 165
+ +SPK A +LLQ + D ID
Sbjct: 22 MVMLSPKDAYKLLQENPDITLID 44
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 26.4 bits (57), Expect = 6.3
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 59 VLDGLLYIKNKIDPTLTLRRSCREGICGSC 88
+ D + +I+ + CREG CG+C
Sbjct: 26 LSDAAY--RQQIN----IPMDCREGECGTC 49
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical
membrane antigen 1, hypothetical protein, immunoglobulin
domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB:
1hn6_A
Length = 581
Score = 26.1 bits (57), Expect = 7.7
Identities = 5/35 (14%), Positives = 16/35 (45%)
Query: 146 VSPKPAKELLQSHEDRQKIDGLYECVMCACCSTSC 180
+SP + +++ + + L E +C+ + +
Sbjct: 158 ISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNM 192
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.139 0.454
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,465,546
Number of extensions: 116794
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 41
Length of query: 259
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 169
Effective length of database: 3,511,270
Effective search space: 593404630
Effective search space used: 593404630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)