Query         gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs    57 out of 59
Neff          4.3 
Searched_HMMs 39220
Date          Mon May 30 04:12:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781045.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam06604 consensus            100.0       0       0  368.6  15.4  160    1-162     1-181 (181)
  2 pfam02974 Inh Protease inhibit  99.9 5.8E-22 1.5E-26  154.9   9.8   95   66-162     2-98  (98)
  3 pfam06474 MLTD_N MLTD_N.        88.8    0.55 1.4E-05   26.1   3.7   18   13-30      8-25  (93)
  4 PRK11138 outer membrane protei  88.8     1.9 4.9E-05   22.8  10.1   26    1-27      1-26  (394)
  5 PRK12407 flgH flagellar basal   87.5    0.82 2.1E-05   25.1   3.9   17    8-24      3-19  (220)
  6 PRK13684 Ycf48-like protein; P  81.9     4.2 0.00011   20.8   6.6   30    4-34      8-37  (333)
  7 PRK09859 multidrug efflux syst  81.0     2.1 5.5E-05   22.5   3.6   23    1-23      1-23  (385)
  8 PRK10871 nlpD lipoprotein NlpD  80.4       4  0.0001   20.9   4.8   21    2-24      9-29  (374)
  9 pfam01299 Lamp Lysosome-associ  79.9     3.4 8.6E-05   21.3   4.3   17   75-91    106-122 (305)
 10 PRK09915 putative outer membra  79.0     4.2 0.00011   20.7   4.6   30    2-34      5-34  (488)
 11 PRK00249 flgH flagellar basal   78.1     4.5 0.00012   20.5   4.6   23    1-25      1-23  (231)
 12 pfam07269 consensus             76.9     1.3 3.2E-05   24.0   1.4   18    5-25      2-19  (55)
 13 PRK12701 flgH flagellar basal   76.0     6.1 0.00016   19.7   4.7   22    1-24      1-22  (230)
 14 COG3056 Uncharacterized lipopr  75.8     2.4 6.1E-05   22.2   2.6   30    3-33     14-43  (204)
 15 COG3317 NlpB Uncharacterized l  74.5     5.4 0.00014   20.1   4.1   22    1-23      1-22  (342)
 16 PRK12696 flgH flagellar basal   74.3     6.2 0.00016   19.7   4.4   19    5-24      3-21  (238)
 17 PRK10866 outer membrane protei  73.1     2.2 5.7E-05   22.4   1.9   23    1-24      1-23  (243)
 18 PRK09967 putative outer membra  72.4     2.4 6.1E-05   22.3   1.9   20    5-24      3-22  (160)
 19 pfam04170 NlpE Uncharacterized  71.7     6.3 0.00016   19.7   3.9   45  111-159    40-84  (86)
 20 pfam04525 DUF567 Protein of un  71.6     8.2 0.00021   19.0   4.5   28  124-151    52-82  (187)
 21 PRK12698 flgH flagellar basal   71.2     7.1 0.00018   19.3   4.1   17    5-24      3-19  (224)
 22 PRK10672 rare lipoprotein A; P  70.8       5 0.00013   20.3   3.3   39    5-43      2-41  (369)
 23 PRK13883 conjugal transfer pro  70.5     3.9 9.8E-05   21.0   2.6   23    9-31      5-28  (156)
 24 PRK10783 mltD membrane-bound l  70.0     8.8 0.00023   18.8   4.6   32   69-103   135-168 (449)
 25 TIGR02747 TraV type IV conjuga  67.7     2.9 7.3E-05   21.7   1.5   27    4-30      2-32  (174)
 26 COG3417 FlgN Collagen-binding   67.2     7.6 0.00019   19.1   3.6   17    7-23      6-22  (200)
 27 PRK12697 flgH flagellar basal   66.7     7.2 0.00018   19.3   3.4   17    9-25     12-28  (227)
 28 PRK11189 lipoprotein NlpI; Pro  64.8     4.6 0.00012   20.5   2.1   21    1-23      2-22  (297)
 29 PRK11063 metQ DL-methionine tr  63.9     5.3 0.00013   20.1   2.2   25    1-25      1-27  (271)
 30 TIGR02722 lp_ uncharacterized   63.8     5.3 0.00013   20.1   2.2   18    8-25      6-23  (215)
 31 PRK13859 type IV secretion sys  62.1       4  0.0001   20.9   1.3   18    5-25      2-19  (55)
 32 PRK10802 peptidoglycan-associa  61.6      13 0.00033   17.8   4.5   25    1-25      1-26  (173)
 33 PRK13835 conjugal transfer pro  61.0     6.9 0.00018   19.4   2.4   16    8-23      4-19  (144)
 34 COG4314 NosL Predicted lipopro  60.2     7.2 0.00018   19.3   2.4   30    5-37      2-31  (176)
 35 TIGR02377 MocE_fam_FeS Rieske   59.8     9.9 0.00025   18.4   3.0   27  119-147    10-36  (101)
 36 PRK10781 rcsF outer membrane l  58.6      11 0.00028   18.2   3.1  126    9-161     4-132 (133)
 37 PRK10461 thiamine biosynthesis  58.4     5.2 0.00013   20.2   1.4   20    1-23      3-22  (351)
 38 PRK12700 flgH flagellar basal   56.9      16  0.0004   17.3   4.2   20    3-24      6-25  (230)
 39 PRK12450 foldase protein PrsA;  56.4     8.9 0.00023   18.7   2.3   24    1-24      1-26  (309)
 40 pfam06291 Lambda_Bor Bor prote  55.1      15 0.00038   17.4   3.3   23    5-28      2-26  (97)
 41 PRK09837 copper/silver efflux   53.0      16 0.00042   17.1   3.2   29    1-35      1-29  (460)
 42 PRK10449 heat-inducible protei  50.9     9.5 0.00024   18.6   1.7  104    8-136     4-132 (140)
 43 PRK09578 periplasmic multidrug  50.3      18 0.00045   16.9   3.0   19    4-23      7-25  (385)
 44 PRK11679 lipoprotein; Provisio  48.9      21 0.00053   16.5   6.3   87    4-95      8-111 (345)
 45 TIGR01004 PulS_OutS lipoprotei  48.3       9 0.00023   18.7   1.3   43    7-50     11-53  (136)
 46 pfam08139 LPAM_1 Prokaryotic m  47.7      13 0.00034   17.7   2.1   14   13-26      9-22  (26)
 47 PRK10760 murein hydrolase B; P  47.5      22 0.00056   16.3   4.1   12   12-23      8-19  (357)
 48 PRK11548 hypothetical protein;  46.7      14 0.00036   17.5   2.1   24    1-25      1-24  (113)
 49 PRK12788 flgH flagellar basal   46.4      23 0.00058   16.2   4.8   15    9-23      4-18  (231)
 50 pfam07901 DUF1672 Protein of u  44.7      15 0.00039   17.3   2.0   19    5-24      3-21  (304)
 51 PRK13731 conjugal transfer sur  44.7      13 0.00033   17.7   1.7   24    1-24      1-24  (243)
 52 pfam05590 DUF769 Xylella fasti  44.2      21 0.00055   16.4   2.7   31    9-39      9-40  (279)
 53 PRK11443 hypothetical protein;  44.2      13 0.00034   17.6   1.7   13   11-23      6-18  (120)
 54 COG3111 Periplasmic protein wi  43.6      25 0.00064   16.0   4.4   38  121-161    70-107 (128)
 55 PRK12699 flgH flagellar basal   42.0      27 0.00068   15.8   4.3   28   11-38     23-50  (246)
 56 PRK02944 OxaA-like protein pre  40.9      28 0.00071   15.7   2.9   18    8-25      8-25  (255)
 57 PRK11627 hypothetical protein;  39.7      17 0.00044   17.0   1.7   18    5-23      3-20  (192)
 58 PRK00022 lolB outer membrane l  38.5      19 0.00049   16.7   1.7   12   13-24     10-21  (203)
 59 PRK10796 LPS-assembly lipoprot  37.8      22 0.00055   16.4   1.9   27    1-29      1-28  (196)
 60 TIGR00495 crvDNA_42K DNA-bindi  37.3      23 0.00059   16.2   2.0   16  127-142   317-332 (407)
 61 PRK02463 OxaA-like protein pre  36.4      31 0.00078   15.4   2.5   22    4-25      6-28  (307)
 62 pfam05643 DUF799 Putative bact  36.4      22 0.00055   16.4   1.7   19   85-103   105-123 (215)
 63 pfam01298 Lipoprotein_5 Transf  36.3      33 0.00084   15.3   4.9   28    1-30      1-29  (589)
 64 pfam09347 DUF1989 Domain of un  36.1      33 0.00084   15.2   3.3   12  129-140    66-77  (167)
 65 TIGR03300 assembly_YfgL outer   35.5      34 0.00086   15.2   9.4   25    8-33      4-28  (377)
 66 pfam02402 Lysis_col Lysis prot  35.1      14 0.00036   17.5   0.6   17    7-23      5-21  (46)
 67 COG0386 BtuE Glutathione perox  34.8      30 0.00078   15.5   2.3   25  114-142   122-146 (162)
 68 PRK11251 DNA-binding transcrip  34.6      26 0.00068   15.8   1.9   23    7-29      4-26  (109)
 69 PRK10525 cytochrome o ubiquino  34.5      35 0.00089   15.1   2.6   24    6-29     10-33  (305)
 70 pfam03534 SpvB Salmonella viru  34.0      36 0.00091   15.0   4.8   56   78-146   133-189 (293)
 71 PRK10718 hypothetical protein;  33.8      19  0.0005   16.7   1.1   30    2-34      2-32  (191)
 72 TIGR00977 LeuA_rel 2-isopropyl  33.4      17 0.00043   17.1   0.7   45   89-136   137-181 (543)
 73 PRK09810 entericidin A; Provis  33.1      31 0.00079   15.4   2.1   22    4-26      3-24  (41)
 74 TIGR03424 urea_degr_1 urea car  32.9      37 0.00095   14.9   3.5   14  107-120   113-127 (198)
 75 pfam06572 DUF1131 Protein of u  32.6      27 0.00069   15.8   1.7   24   11-34      8-32  (192)
 76 KOG0175 consensus               32.2      35  0.0009   15.0   2.3   33  113-146   170-203 (285)
 77 COG4238 Murein lipoprotein [Ce  32.1      29 0.00075   15.6   1.8   19    5-23      5-23  (78)
 78 TIGR02544 III_secr_YscJ type I  32.0      30 0.00076   15.5   1.8   21   10-30      6-28  (203)
 79 pfam08085 Entericidin Enterici  32.0      32 0.00081   15.3   2.0   22    7-28      7-28  (42)
 80 KOG0263 consensus               30.8      40   0.001   14.7   4.5   47  113-160   557-603 (707)
 81 COG4380 Uncharacterized protei  30.4      31  0.0008   15.4   1.7   20    4-24      1-20  (216)
 82 COG4594 FecB ABC-type Fe3+-cit  30.4      39   0.001   14.8   2.2   23    7-29      8-30  (310)
 83 TIGR01433 CyoA ubiquinol oxida  30.1      23 0.00058   16.3   1.0   20    9-28      1-21  (228)
 84 PRK10053 hypothetical protein;  30.1      41  0.0011   14.6   4.2   38  121-161    74-111 (130)
 85 TIGR02521 type_IV_pilW type IV  29.5      23 0.00058   16.2   0.9   15   11-25      2-16  (247)
 86 COG4259 Uncharacterized protei  29.4      37 0.00093   15.0   1.9   20    4-23      5-24  (121)
 87 TIGR01840 esterase_phb esteras  29.0     8.5 0.00022   18.9  -1.4   12   13-24     19-30  (231)
 88 COG3133 SlyB Outer membrane li  28.9      32 0.00083   15.3   1.6   31  120-151   109-140 (154)
 89 pfam12079 DUF3558 Protein of u  28.9      27 0.00069   15.8   1.2  114   16-132     2-121 (168)
 90 pfam04076 BOF Bacterial OB fol  28.4      44  0.0011   14.4   4.0   37  122-161    71-107 (126)
 91 COG3521 Predicted component of  27.4      43  0.0011   14.6   2.0   22    1-23      1-22  (159)
 92 TIGR02898 spore_YhcN_YlaJ spor  26.7      38 0.00097   14.9   1.6   21    8-28      2-24  (185)
 93 PRK10957 iron-enterobactin tra  26.2      49  0.0012   14.2   2.4   21    4-24      4-24  (319)
 94 TIGR03302 OM_YfiO outer membra  26.1      43  0.0011   14.6   1.8   17    8-24      4-20  (235)
 95 TIGR03659 IsdE heme ABC transp  25.7      46  0.0012   14.4   1.9   19    6-24      4-22  (289)
 96 pfam00541 Adeno_knob Adenovira  25.6      50  0.0013   14.1   2.4   52   84-136    15-68  (170)
 97 pfam03276 Gag_spuma Spumavirus  25.6      35  0.0009   15.1   1.3   38   73-110   292-329 (582)
 98 PRK10523 lipoprotein involved   25.1      51  0.0013   14.1   4.7   44  111-158    84-127 (234)
 99 COG5645 Predicted periplasmic   25.0      37 0.00095   14.9   1.3   19    5-24      2-20  (80)
100 COG3107 LppC Putative lipoprot  24.9      51  0.0013   14.1   2.1   50   85-135   358-423 (604)
101 KOG2391 consensus               24.4      52  0.0013   14.0   5.9   38    4-45    120-157 (365)
102 PRK13733 conjugal transfer pro  24.2      32 0.00082   15.3   0.9   26    5-30      3-30  (171)
103 PRK13616 lipoprotein LpqB; Pro  23.8      54  0.0014   13.9   3.8   16    9-24     10-25  (590)
104 COG4939 Major membrane immunog  23.7      54  0.0014   14.0   1.9   24    5-28      3-26  (147)
105 pfam10023 DUF2265 Predicted am  23.6      35 0.00089   15.1   1.0   71   11-83      3-92  (338)
106 PRK10510 putative outer membra  23.5      55  0.0014   13.9   2.6   51   71-121    88-140 (219)
107 PRK04168 hypothetical protein;  22.4      58  0.0015   13.8   2.2   23    2-24      4-26  (336)
108 PRK04405 prsA peptidylprolyl i  22.3      55  0.0014   13.9   1.8   21    3-23      4-26  (298)
109 TIGR02887 spore_ger_x_C germin  21.5      60  0.0015   13.7   2.0   18    6-23      3-20  (400)
110 COG5510 Predicted small secret  21.3      52  0.0013   14.0   1.5   24    6-29      7-30  (44)
111 pfam11873 DUF3393 Domain of un  21.1      42  0.0011   14.6   1.0   16    9-24      4-19  (200)
112 PRK10397 hypothetical protein;  20.5      63  0.0016   13.5   1.8   30   13-42      8-38  (137)
113 TIGR00409 proS_fam_II prolyl-t  20.3      60  0.0015   13.6   1.6   24  113-136    84-110 (620)
114 cd04814 PA_M28_1 PA_M28_1: Pro  20.0      64  0.0016   13.5   1.8   15  119-133    45-59  (142)
115 COG4764 Uncharacterized protei  20.0      60  0.0015   13.6   1.6   13   12-24     11-23  (197)

No 1  
>pfam06604 consensus
Probab=100.00  E-value=0  Score=368.60  Aligned_cols=160  Identities=24%  Similarity=0.451  Sum_probs=148.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEECCCCC-------CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC-----------
Q ss_conf             92002369999999998405412037887-------778766688874345735899888--7788654-----------
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQIDFGNI-------FFKKPEISLPPSVESEILLPPIPE--EEFDQDD-----------   60 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~~~~~~-------~~~p~~a~p~~~V~s~~l~pp~~~--~~~~~~~-----------   60 (162)
                      |+|+|+.|+...+++|+|+||||++|+++       +++|++++|+++|+++||+||++.  ++|+.+|           
T Consensus         1 M~~sk~~~~~~~~~v~~laGCq~~~~~~~~~~~~~~~~~Pl~a~P~~~V~s~qL~pp~~~~~~~~~~~p~~~~~~~~~~a   80 (181)
T pfam06604         1 MNFSKAGLVAGLAAVLVLAGCQRSRFGNMDDVSPPQQPAPLQAQPAGSVQSGQLPPPAGADPSQFPTAPATAAPGGTQVA   80 (181)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             96206778999999999734453334677887776788875667677534685698998876667679987788875544


Q ss_pred             -CCCCCCCCCCCCHHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHCCCCEEECCCCEEEEECCCCCEEEEE
Q ss_conf             -4667632237701136578863689736889713667777145436773000002100333871899982899879999
Q gi|254781045|r   61 -ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVF  139 (162)
Q Consensus        61 -~~~p~~a~~~~r~sl~G~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v~~l  139 (162)
                       +++|++|.|++|++|+|+|+|+++|++|+||||+|||++||||++|||+++|++|++|||+||| |+|||++|++|++|
T Consensus        81 ~~~ppa~a~dl~~~s~~G~W~vs~gg~sC~~~ltlTk~g~GyRAgtrgC~g~l~~v~aW~v~Gkq-v~L~d~sG~~va~L  159 (181)
T pfam06604        81 SLPPPAGALDLTKEAVAGVWNASVGGQSCKIATPQTKLGSGSRAGPLGCPGELTAMGSWEVAGKQ-LVLYDRNGGTIARL  159 (181)
T ss_pred             CCCCCCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHCCCEEEECCCE-EEEECCCCCEEEEE
T ss_conf             67999865555734705466850389712788533133786545668888201000002533888-99985999999999


Q ss_pred             EECCCCCEECCCCCCCCEEEEEC
Q ss_conf             95489732201137896188739
Q gi|254781045|r  140 YKTAEQSFEGSFQGESDKVIISR  162 (162)
Q Consensus       140 ~~s~~grfeG~t~~~G~pisLsR  162 (162)
                      |+++++||||+|+ +||||+|+|
T Consensus       160 yss~~~rf~G~T~-~gqPvsLsR  181 (181)
T pfam06604       160 YSSGDARFDGQTN-GGQPVSLSR  181 (181)
T ss_pred             ECCCCCCEEEEEC-CCCEEEECC
T ss_conf             6468863021525-895257329


No 2  
>pfam02974 Inh Protease inhibitor Inh. The Inh inhibitor is secreted into the periplasm where its presumed physiological function is to protect periplasmic proteins against the action of secreted proteases. A range of proteases including A, B and C from E. chrysanthemi, alkaline protease from Pseudomonas aeruginosa and the 50 kDa protease from Serratia marcescens are inhibited.
Probab=99.87  E-value=5.8e-22  Score=154.92  Aligned_cols=95  Identities=22%  Similarity=0.488  Sum_probs=87.6

Q ss_pred             CCCCCCCHHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC-HHCC-CCEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             3223770113657886368973688971366777714543677300-0002-1003338718999828998799999548
Q gi|254781045|r   66 KDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGR-LASL-AAWNIIDEDSFELKNKSGQTIIVFYKTA  143 (162)
Q Consensus        66 ~a~~~~r~sl~G~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~gC~g~-L~~i-~aW~v~G~~vl~L~D~sG~~v~~l~~s~  143 (162)
                      +....++++|+|+|+|+.++++|+|+|++|+++++||++.++|+++ |..+ .+|++++++ |.|+|+.|+.|+.||+++
T Consensus         2 Sl~lp~~a~LaG~W~ls~~~~~C~i~L~~t~~~~~~l~g~~~C~~~~L~~~~~~W~ptpdg-i~L~d~~Gs~va~l~~~~   80 (98)
T pfam02974         2 SLVLPSPASLAGQWQLSKGGQVCDIELTQTKLGQGYLAGDLACLGEWLGEVPSGWRPTPDG-LALTDASGSTVAFLYRSG   80 (98)
T ss_pred             CCCCCCHHHHCEEEEEECCCCCEEEEEECCCCCCCEECCCCCCCHHHHCCCCCCEEECCCE-EEEECCCCCEEEEEEECC
T ss_conf             6446985682206787049982488931372666220477256655652664447526998-999879999899998058


Q ss_pred             CCCEECCCCCCCCEEEEEC
Q ss_conf             9732201137896188739
Q gi|254781045|r  144 EQSFEGSFQGESDKVIISR  162 (162)
Q Consensus       144 ~grfeG~t~~~G~pisLsR  162 (162)
                      +++|+|++. +|+||+|+|
T Consensus        81 ~~~y~g~t~-~G~~~~L~R   98 (98)
T pfam02974        81 EGRYEGQTP-DGQPLTLSR   98 (98)
T ss_pred             CCEEEEEEC-CCCEEEEEC
T ss_conf             954772808-997788639


No 3  
>pfam06474 MLTD_N MLTD_N.
Probab=88.84  E-value=0.55  Score=26.15  Aligned_cols=18  Identities=17%  Similarity=0.196  Sum_probs=11.5

Q ss_pred             HHHHHHCCCEEECCCCCC
Q ss_conf             999984054120378877
Q gi|254781045|r   13 MLTLFSHGCTQIDFGNIF   30 (162)
Q Consensus        13 ~~~l~laGCq~~~~~~~~   30 (162)
                      +++++|+|||++......
T Consensus         8 ~~alLLaGCQst~~~~~~   25 (93)
T pfam06474         8 AAALLLVGCQSTQAVSST   25 (93)
T ss_pred             HHHHHHHHHCCCCCCCCC
T ss_conf             999999981379999998


No 4  
>PRK11138 outer membrane protein assembly complex subunit YfgL; Provisional
Probab=88.81  E-value=1.9  Score=22.83  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=19.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf             920023699999999984054120378
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQIDFG   27 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~~~~   27 (162)
                      |.|.|+.+..|..+ ++|+||+..+-+
T Consensus         1 ~~~~~~~~~~l~~~-~ll~gCs~~~~~   26 (394)
T PRK11138          1 MQLRKLLLPGLLSV-ALLSGCSLFDSE   26 (394)
T ss_pred             CCHHHHHHHHHHHH-HHHHHCCCCCCC
T ss_conf             95167799999999-998652378888


No 5  
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=87.53  E-value=0.82  Score=25.09  Aligned_cols=17  Identities=29%  Similarity=0.385  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHCCCEEE
Q ss_conf             99999999984054120
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~   24 (162)
                      ++.|+.++|+|+||.+.
T Consensus         3 ~l~l~~~~l~LsGC~~~   19 (220)
T PRK12407          3 FLILTPMVLALCGCESP   19 (220)
T ss_pred             CHHHHHHHHHHHCCCCC
T ss_conf             57999999997365888


No 6  
>PRK13684 Ycf48-like protein; Provisional
Probab=81.92  E-value=4.2  Score=20.76  Aligned_cols=30  Identities=23%  Similarity=0.153  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf             0236999999999840541203788777876
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQIDFGNIFFKKP   34 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~~~~~~~~~p~   34 (162)
                      .+-.++.+ ++.++++||.+++.-..+..|=
T Consensus         8 ~~~l~l~~-~~~~~~~~c~~~~~p~~~~~pw   37 (333)
T PRK13684          8 LLNLLLLL-ALGLVLSGCSTTRVPMASSSPW   37 (333)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCCCCCCCC
T ss_conf             99999999-9998632235667765578987


No 7  
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=80.98  E-value=2.1  Score=22.53  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             92002369999999998405412
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~   23 (162)
                      |+=.|+.++.|.+.++.|+||..
T Consensus         1 m~~k~~~li~ll~~~~lL~gC~~   23 (385)
T PRK09859          1 MNRRRKLLIPLLFCGAMLTACDD   23 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             98206789999999999953799


No 8  
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=80.41  E-value=4  Score=20.88  Aligned_cols=21  Identities=33%  Similarity=0.624  Sum_probs=14.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             20023699999999984054120
Q gi|254781045|r    2 HFYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         2 ~f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      +|-|++++.|  +.+.|+||+..
T Consensus         9 ~~~~~~~~~~--~~~~l~gcs~~   29 (374)
T PRK10871          9 TVRRIAALSL--VSLWLAGCTNT   29 (374)
T ss_pred             HHHHHHHHHH--HHHHHECCCCC
T ss_conf             7789999999--99860103788


No 9  
>pfam01299 Lamp Lysosome-associated membrane glycoprotein (Lamp).
Probab=79.89  E-value=3.4  Score=21.32  Aligned_cols=17  Identities=18%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             EEEEEEECCCCCEEEEE
Q ss_conf             36578863689736889
Q gi|254781045|r   75 IIGAWKVSYRDVDCKMI   91 (162)
Q Consensus        75 l~G~W~vs~~g~sC~v~   91 (162)
                      -+|.|+|+.+++.|-+.
T Consensus       106 ~~G~Y~V~~~n~tClLA  122 (305)
T pfam01299       106 AVGNYSVTNGNGTCLLA  122 (305)
T ss_pred             CCCEEEEECCCCEEHHH
T ss_conf             85458997899667654


No 10 
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=79.02  E-value=4.2  Score=20.74  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf             200236999999999840541203788777876
Q gi|254781045|r    2 HFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKP   34 (162)
Q Consensus         2 ~f~~~~~~~l~~~~l~laGCq~~~~~~~~~~p~   34 (162)
                      +++|+.+..+...+++|+||..   +..+.+|.
T Consensus         5 ~~~r~~~~~~l~~~~lLagC~~---~p~~~~p~   34 (488)
T PRK09915          5 QLSRLLLCSILGSTTLISGCAL---VRKDSAPH   34 (488)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC---CCCCCCCC
T ss_conf             7769999999999999752668---99999999


No 11 
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=78.10  E-value=4.5  Score=20.53  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=15.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             9200236999999999840541203
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~~   25 (162)
                      |++.++.++.+  ++++|+||.+..
T Consensus         1 ~~~~~~~~~~~--~~~~LsgCa~~~   23 (231)
T PRK00249          1 MAMMLIALALL--LLLLLSGCASIP   23 (231)
T ss_pred             CCCHHHHHHHH--HHHHHHHCCCCC
T ss_conf             93389999999--999987534899


No 12 
>pfam07269 consensus
Probab=76.91  E-value=1.3  Score=23.96  Aligned_cols=18  Identities=39%  Similarity=0.628  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHCCCEEEC
Q ss_conf             236999999999840541203
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~~   25 (162)
                      ||.++.|   ++.|||||+.+
T Consensus         2 Ky~ll~l---~l~LAgC~T~d   19 (55)
T pfam07269         2 KYCLLLL---ILALAGCQTND   19 (55)
T ss_pred             HHHHHHH---HHHHHHCCCCC
T ss_conf             0149999---99987511467


No 13 
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=75.99  E-value=6.1  Score=19.73  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=13.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             920023699999999984054120
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      |+=.+++++-|  .+++|+||+..
T Consensus         1 m~r~~~~~~~l--a~~lL~GC~~~   22 (230)
T PRK12701          1 MNRLNIAVSCL--ATALLFGCEAL   22 (230)
T ss_pred             CCHHHHHHHHH--HHHHHHCCCCC
T ss_conf             92589999999--99997556688


No 14 
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=75.85  E-value=2.4  Score=22.24  Aligned_cols=30  Identities=20%  Similarity=0.228  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
Q ss_conf             0023699999999984054120378877787
Q gi|254781045|r    3 FYRFILLNLYMLTLFSHGCTQIDFGNIFFKK   33 (162)
Q Consensus         3 f~~~~~~~l~~~~l~laGCq~~~~~~~~~~p   33 (162)
                      ..+.+++.| ...++|+|||+..-.-...+|
T Consensus        14 ~t~k~L~~l-aa~~lLagC~a~~~tl~~tpp   43 (204)
T COG3056          14 MTKKILFPL-AAIFLLAGCAAPPTTLIVTPP   43 (204)
T ss_pred             HHHHHHHHH-HHHHHHHHCCCCCCEEECCCC
T ss_conf             899999999-999999753799750313699


No 15 
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=74.50  E-value=5.4  Score=20.05  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             92002369999999998405412
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~   23 (162)
                      |.|++..++++ ++++.|+||++
T Consensus         1 ~k~~~~lv~~a-l~v~~LaaCSs   22 (342)
T COG3317           1 MKSSAKLVLGA-LLVLLLAACSS   22 (342)
T ss_pred             CCHHHHHHHHH-HHHHHHHHCCC
T ss_conf             91178899999-99998741468


No 16 
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=74.29  E-value=6.2  Score=19.72  Aligned_cols=19  Identities=26%  Similarity=0.419  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEE
Q ss_conf             23699999999984054120
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~   24 (162)
                      |..++.+ ..+++|+||.+.
T Consensus         3 ~~~l~~~-~~~~~L~GC~~~   21 (238)
T PRK12696          3 RKLLAAS-CAVLLLSGCNAA   21 (238)
T ss_pred             HHHHHHH-HHHHHHHCCCCC
T ss_conf             8999999-999995165688


No 17 
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=73.14  E-value=2.2  Score=22.41  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=18.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             920023699999999984054120
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      ||=.|+.+..+ .+.|+|+||+..
T Consensus         1 m~~~k~l~~~~-~l~l~l~gCs~~   23 (243)
T PRK10866          1 MTRMKYLVAAA-TLSLFLAGCSGS   23 (243)
T ss_pred             CCHHHHHHHHH-HHHHHHHHCCCC
T ss_conf             94589999999-999999876899


No 18 
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=72.43  E-value=2.4  Score=22.26  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHCCCEEE
Q ss_conf             23699999999984054120
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~   24 (162)
                      |..++.+++..|+|+|||+.
T Consensus         3 k~~~~~~l~~~l~lsgC~s~   22 (160)
T PRK09967          3 KHLVAPLIFTSLILTGCQSP   22 (160)
T ss_pred             HHHHHHHHHHHHHHHHCCCC
T ss_conf             78999999999999845899


No 19 
>pfam04170 NlpE Uncharacterized lipoprotein NlpE involved in copper resistance. This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. In Escherichia coli and Salmonella typhi, NlpE is also known to confer copper tolerance in copper-sensitive strains of Escherichia coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes.
Probab=71.75  E-value=6.3  Score=19.67  Aligned_cols=45  Identities=22%  Similarity=0.390  Sum_probs=34.2

Q ss_pred             CHHCCCCEEECCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEE
Q ss_conf             0000210033387189998289987999995489732201137896188
Q gi|254781045|r  111 RLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVI  159 (162)
Q Consensus       111 ~L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pis  159 (162)
                      .......|+..| ++++|.|..|+  .+.|+...+..+=.-. +|+||.
T Consensus        40 ~~~g~~~W~~~~-~~i~L~~~~~~--~~~y~v~~~~L~~LD~-~G~~I~   84 (86)
T pfam04170        40 TFAGYGTWNRTG-DKITLTDSEGE--KTQYFVGENRLEMLDR-EGKRIT   84 (86)
T ss_pred             EEEEEEEEECCC-CEEEEECCCCC--EEEEEECCCEEEEECC-CCCCCC
T ss_conf             687689997589-99999438998--7799987998982446-999687


No 20 
>pfam04525 DUF567 Protein of unknown function (DUF567). Family of uncharacterized proteins. This family contains both plant and bacterial members.
Probab=71.55  E-value=8.2  Score=18.97  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=15.0

Q ss_pred             CEEEEECCCCCEEEEEEEC---CCCCEECCC
Q ss_conf             1899982899879999954---897322011
Q gi|254781045|r  124 DSFELKNKSGQTIIVFYKT---AEQSFEGSF  151 (162)
Q Consensus       124 ~vl~L~D~sG~~v~~l~~s---~~grfeG~t  151 (162)
                      +.++|.|..|+++..+.+-   =.++|++.+
T Consensus        52 ~~~~LmD~~G~~LltirrK~lsl~~~W~~y~   82 (187)
T pfam04525        52 DERVLMDSSGKPLLTIRRKKLSLHDRWEVYR   82 (187)
T ss_pred             CEEEEECCCCCEEEEEEEHHCCCCCEEEEEC
T ss_conf             8699997999998999963301245799995


No 21 
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=71.22  E-value=7.1  Score=19.33  Aligned_cols=17  Identities=47%  Similarity=0.948  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEE
Q ss_conf             23699999999984054120
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~   24 (162)
                      ||+++.+   +++|+||..+
T Consensus         3 r~~l~~~---~l~L~gCa~~   19 (224)
T PRK12698          3 RYILLAL---ALLLAGCSST   19 (224)
T ss_pred             HHHHHHH---HHHHHCCCCC
T ss_conf             7999999---9998365688


No 22 
>PRK10672 rare lipoprotein A; Provisional
Probab=70.77  E-value=5  Score=20.27  Aligned_cols=39  Identities=13%  Similarity=-0.013  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCCCCCCC
Q ss_conf             23699999999984054120378877-7876668887434
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQIDFGNIF-FKKPEISLPPSVE   43 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~~~~~~~-~~p~~a~p~~~V~   43 (162)
                      |.-.|.+.+++++|+||.+.+-.... .+|.++.+.++|+
T Consensus         2 r~~wl~~~~~~~ll~~c~~~~~~~~~~~~p~~~~~~~p~~   41 (369)
T PRK10672          2 RKQWLGICIAAGLLAACTSDDGQQQTVSQPQPAVCNGPTV   41 (369)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             3335899999999865258864556667898767887612


No 23 
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=70.48  E-value=3.9  Score=20.97  Aligned_cols=23  Identities=35%  Similarity=0.639  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHCCCE-EECCCCCCC
Q ss_conf             99999999840541-203788777
Q gi|254781045|r    9 LNLYMLTLFSHGCT-QIDFGNIFF   31 (162)
Q Consensus         9 ~~l~~~~l~laGCq-~~~~~~~~~   31 (162)
                      +.+++++++|+||- +..|||+-.
T Consensus         5 ~~~all~laL~gCAtt~~YGNFv~   28 (156)
T PRK13883          5 LSLALLALALGGCATTSQYGNFVQ   28 (156)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999703313578877358


No 24 
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=70.00  E-value=8.8  Score=18.76  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=17.8

Q ss_pred             CCCCHHEEEEEEEC--CCCCEEEEEEECCCCCCCCCC
Q ss_conf             37701136578863--689736889713667777145
Q gi|254781045|r   69 NAIRMGIIGAWKVS--YRDVDCKMILTLTRFKKNFRG  103 (162)
Q Consensus        69 ~~~r~sl~G~W~vs--~~g~sC~v~Lt~t~~~~Gyra  103 (162)
                      +.++..-+|-|..-  +| +  ...|..+.|-++=|-
T Consensus       135 A~S~a~AaGlWQFmp~Tg-r--~yGL~~n~w~DeRrD  168 (449)
T PRK10783        135 ATSGANAAGIWQIIPSTG-R--NYGLKQTRWYDARRD  168 (449)
T ss_pred             CCCCCCCCCCCCCCHHHH-H--HCCCCCCCCCCCCCC
T ss_conf             836988830010267679-8--759873664213589


No 25 
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=67.66  E-value=2.9  Score=21.74  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHH-HCCCEE-ECC--CCCC
Q ss_conf             02369999999998-405412-037--8877
Q gi|254781045|r    4 YRFILLNLYMLTLF-SHGCTQ-IDF--GNIF   30 (162)
Q Consensus         4 ~~~~~~~l~~~~l~-laGCq~-~~~--~~~~   30 (162)
                      -|+.+|.++.+++| |+||+. .-+  +.+|
T Consensus         2 mr~~~L~~~~~~~f~LtGCsa~~g~i~~~~f   32 (174)
T TIGR02747         2 MRLKVLLLLACVAFLLTGCSASLGLIHNSDF   32 (174)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             0678999999998720025774565258897


No 26 
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=67.25  E-value=7.6  Score=19.14  Aligned_cols=17  Identities=35%  Similarity=0.831  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHCCCEE
Q ss_conf             69999999998405412
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~   23 (162)
                      ++..++.+++++.||+.
T Consensus         6 ~~~~il~~al~l~GCs~   22 (200)
T COG3417           6 IYASILLLALFLSGCSS   22 (200)
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999841136


No 27 
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=66.67  E-value=7.2  Score=19.31  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHCCCEEEC
Q ss_conf             99999999840541203
Q gi|254781045|r    9 LNLYMLTLFSHGCTQID   25 (162)
Q Consensus         9 ~~l~~~~l~laGCq~~~   25 (162)
                      -..++.+|+|+||..+.
T Consensus        12 ~~~al~~l~LsGCa~~~   28 (227)
T PRK12697         12 AACALAALALAGCAQIP   28 (227)
T ss_pred             HHHHHHHHHHHCCCCCC
T ss_conf             99999999972656789


No 28 
>PRK11189 lipoprotein NlpI; Provisional
Probab=64.82  E-value=4.6  Score=20.50  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=14.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             92002369999999998405412
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~   23 (162)
                      |.|.|+.++.+  .++.|+||.+
T Consensus         2 ~~~~r~~~~~~--~~l~LsGC~s   22 (297)
T PRK11189          2 KPFLRWCFVAT--AALLLAGCAS   22 (297)
T ss_pred             CHHHHHHHHHH--HHHHHHHHCC
T ss_conf             51899999999--9999986405


No 29 
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=63.87  E-value=5.3  Score=20.12  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=17.9

Q ss_pred             CCCHHHHHHHH--HHHHHHHCCCEEEC
Q ss_conf             92002369999--99999840541203
Q gi|254781045|r    1 MHFYRFILLNL--YMLTLFSHGCTQID   25 (162)
Q Consensus         1 m~f~~~~~~~l--~~~~l~laGCq~~~   25 (162)
                      |.|.+..|+.+  .+++++|+||...+
T Consensus         1 m~~~~k~~~~~~~l~~~l~l~gCg~~~   27 (271)
T PRK11063          1 MAFKFKTFAAVGALIGSLALVGCGQDE   27 (271)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             960299999999999999750058985


No 30 
>TIGR02722 lp_ uncharacterized lipoprotein; InterPro: IPR014094   Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby..
Probab=63.83  E-value=5.3  Score=20.13  Aligned_cols=18  Identities=28%  Similarity=0.565  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHCCCEEEC
Q ss_conf             999999999840541203
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~~   25 (162)
                      +..++.++|+|+||+..+
T Consensus         6 l~~~~~~Al~L~GC~~~~   23 (215)
T TIGR02722         6 LIFVALLALLLSGCVSQR   23 (215)
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             899999999985468872


No 31 
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=62.11  E-value=4  Score=20.89  Aligned_cols=18  Identities=39%  Similarity=0.689  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHCCCEEEC
Q ss_conf             236999999999840541203
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~~   25 (162)
                      ||-+|   .+++.|++||+.+
T Consensus         2 KY~lL---~l~l~La~CqT~D   19 (55)
T PRK13859          2 KYCLL---CLALALAGCQTND   19 (55)
T ss_pred             CHHHH---HHHHHHHHCCCCC
T ss_conf             01399---9999998600468


No 32 
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=61.63  E-value=13  Score=17.76  Aligned_cols=25  Identities=8%  Similarity=0.170  Sum_probs=14.0

Q ss_pred             CCCHHHHHHH-HHHHHHHHCCCEEEC
Q ss_conf             9200236999-999999840541203
Q gi|254781045|r    1 MHFYRFILLN-LYMLTLFSHGCTQID   25 (162)
Q Consensus         1 m~f~~~~~~~-l~~~~l~laGCq~~~   25 (162)
                      |.|.|+.-.. +++.+++|++|+++.
T Consensus         1 M~~nk~~K~l~ia~~~l~LaACSS~~   26 (173)
T PRK10802          1 MQLNKVLKGLMIALPVMAIAACSSNK   26 (173)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             96078999999999999998557999


No 33 
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=61.03  E-value=6.9  Score=19.41  Aligned_cols=16  Identities=38%  Similarity=0.727  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHCCCEE
Q ss_conf             9999999998405412
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~   23 (162)
                      ++...+++++|+|||+
T Consensus         4 ll~~~i~a~~lsgCqt   19 (144)
T PRK13835          4 LLAACILALLLSGCQT   19 (144)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999998640413


No 34 
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=60.25  E-value=7.2  Score=19.30  Aligned_cols=30  Identities=20%  Similarity=0.178  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
Q ss_conf             236999999999840541203788777876668
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQIDFGNIFFKKPEIS   37 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~~~~~~~~~p~~a~   37 (162)
                      |-.+|....+.++||||++.+   ..++|+|.+
T Consensus         2 kr~Lla~la~~~llAgC~~~e---d~~~p~P~~   31 (176)
T COG4314           2 KRTLLAILAVTALLAGCRQAE---DGAPPLPRQ   31 (176)
T ss_pred             CHHHHHHHHHHHHHHHCCHHH---CCCCCCCCC
T ss_conf             403799999999987534311---389998702


No 35 
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily; InterPro: IPR012747    This entry describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H]..
Probab=59.83  E-value=9.9  Score=18.45  Aligned_cols=27  Identities=22%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EECCCCEEEEECCCCCEEEEEEECCCCCE
Q ss_conf             33387189998289987999995489732
Q gi|254781045|r  119 NIIDEDSFELKNKSGQTIIVFYKTAEQSF  147 (162)
Q Consensus       119 ~v~G~~vl~L~D~sG~~v~~l~~s~~grf  147 (162)
                      +|--++++|+ ||+||+.|.| +++++.+
T Consensus        10 di~~Edv~Rf-DHgGRtfAIy-R~pDD~y   36 (101)
T TIGR02377        10 DIDREDVIRF-DHGGRTFAIY-RTPDDEY   36 (101)
T ss_pred             CCCCCCCEEE-CCCCCEEEEE-ECCCCCE
T ss_conf             6576661686-2799505887-2789854


No 36 
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=58.64  E-value=11  Score=18.16  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEE-EEEE-C-CCC
Q ss_conf             999999998405412037887778766688874345735899888778865446676322377011365-7886-3-689
Q gi|254781045|r    9 LNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDDISVPSKDNNAIRMGIIG-AWKV-S-YRD   85 (162)
Q Consensus         9 ~~l~~~~l~laGCq~~~~~~~~~~p~~a~p~~~V~s~~l~pp~~~~~~~~~~~~~p~~a~~~~r~sl~G-~W~v-s-~~g   85 (162)
                      |-+.+++|+++||+-.++....+..          +-.. ++..++.-+.++-+.|.. +--..++++| -++. . ..|
T Consensus         4 lpi~llal~ltGCs~l~~~p~~~~~----------~~~~-~~~~~~~~~k~~r~apVk-lY~~~e~L~g~pf~~LG~V~G   71 (133)
T PRK10781          4 LPICLLALMLTGCSMLSRSPVEPVQ----------STAP-PPKAEPAKPKAPRAAPVR-IYTNAEELVGKPFRDLGEVSG   71 (133)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCC----------CCCC-CCCCCCCCCCCCCCCCEE-EECCHHHHCCCCCHHCCEEEC
T ss_conf             8999999998431344548876444----------6678-777678777778888668-766877865897223034656


Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCHHCCCCEEECCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf             7368897136677771454367730000021003338718999828998799999548973220113789618873
Q gi|254781045|r   86 VDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS  161 (162)
Q Consensus        86 ~sC~v~Lt~t~~~~Gyra~~~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs  161 (162)
                      .+|+.....-+- +---|.      ....+++=+++. |.|+|+.-  .    ..+...|=|.-..- .|++|.++
T Consensus        72 esCQ~~~qd~Pa-si~~AR------t~ar~~AA~m~A-Navll~~C--~----i~~~~~gC~s~aiC-~G~Al~v~  132 (133)
T PRK10781         72 ESCQASNQDSPP-SIPTAR------KRMQINASKMKA-NAVLLHSC--E----ITSGTPGCYRQAVC-IGSALNIS  132 (133)
T ss_pred             CCCCCCCCCCCC-CHHHHH------HHHHHHHHHCCC-CEEEEEEE--E----EECCCCCHHHHHEE-EEEEEEEC
T ss_conf             201157778998-679999------999999985579-86999765--7----75388653454414-00365412


No 37 
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=58.41  E-value=5.2  Score=20.18  Aligned_cols=20  Identities=45%  Similarity=0.715  Sum_probs=15.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             92002369999999998405412
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~   23 (162)
                      |+|.|++||.+   .+++.||+.
T Consensus         3 ~~~~~~~ll~~---~~~l~gC~~   22 (351)
T PRK10461          3 MTFTRVALLAA---ALLLVGCDQ   22 (351)
T ss_pred             CHHHHHHHHHH---HHHHHHHCC
T ss_conf             30799999999---999987248


No 38 
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=56.86  E-value=16  Score=17.25  Aligned_cols=20  Identities=25%  Similarity=0.484  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             0023699999999984054120
Q gi|254781045|r    3 FYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         3 f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      -.|+.+..  ++.++|+||+..
T Consensus         6 ~~Rl~~~~--~~~~ll~GCa~~   25 (230)
T PRK12700          6 VLRLPVCA--ALLALAAGCAMI   25 (230)
T ss_pred             HHHHHHHH--HHHHHHHCCCCC
T ss_conf             99999999--999997444689


No 39 
>PRK12450 foldase protein PrsA; Reviewed
Probab=56.45  E-value=8.9  Score=18.75  Aligned_cols=24  Identities=8%  Similarity=0.144  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHHH--HHHHHHCCCEEE
Q ss_conf             920023699999--999984054120
Q gi|254781045|r    1 MHFYRFILLNLY--MLTLFSHGCTQI   24 (162)
Q Consensus         1 m~f~~~~~~~l~--~~~l~laGCq~~   24 (162)
                      |.-.|..+++++  ..+|+|+||+..
T Consensus         1 m~~mKK~~~~~~~~~svl~LaAC~s~   26 (309)
T PRK12450          1 MKQMNKLITGVVTLATVVTLSACQSS   26 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             91799999999999999999860589


No 40 
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=55.06  E-value=15  Score=17.38  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHCCCEE--ECCCC
Q ss_conf             2369999999998405412--03788
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQ--IDFGN   28 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~--~~~~~   28 (162)
                      |..++.. +++|+|+||.+  ...++
T Consensus         2 Kk~~~~~-~~allLtgCa~QT~~~~~   26 (97)
T pfam06291         2 KKMLFAA-ALALLITGCAQQTFTVGN   26 (97)
T ss_pred             HHHHHHH-HHHHHHCCCCCEEEEECC
T ss_conf             2259999-999997213304999357


No 41 
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=53.00  E-value=16  Score=17.10  Aligned_cols=29  Identities=14%  Similarity=0.314  Sum_probs=17.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
Q ss_conf             92002369999999998405412037887778766
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPE   35 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~~~~~~~~~p~~   35 (162)
                      |+=+|+..+.   ++++|+||.   .++.|..|..
T Consensus         1 ~~~~rll~l~---~~l~L~gC~---~~P~y~~P~~   29 (460)
T PRK09837          1 MSPCKLLPFC---VALALTGCS---LAPDYQRPAM   29 (460)
T ss_pred             CCHHHHHHHH---HHHHHCCCC---CCCCCCCCCC
T ss_conf             9757899999---999982477---8999999699


No 42 
>PRK10449 heat-inducible protein; Provisional
Probab=50.92  E-value=9.5  Score=18.57  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCC-CCC----CCCCCCCCCCHHE
Q ss_conf             999999999840541203788777876668887434573589-------9888778865-446----6763223770113
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLP-------PIPEEEFDQD-DIS----VPSKDNNAIRMGI   75 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~~~~~~~~~p~~a~p~~~V~s~~l~p-------p~~~~~~~~~-~~~----~p~~a~~~~r~sl   75 (162)
                      ++.+..+.++++||++..-.             +|..++|..       .++.+...++ +++    ..-.+-..+=+..
T Consensus         4 ~l~l~~~~llLagC~s~~~~-------------~vs~~~Lq~h~wvL~svdG~~v~~~~~~p~l~F~e~~~vsg~gCN~f   70 (140)
T PRK10449          4 VVALVALSLLMAGCVSSGKI-------------SVTPEQLQHHRFVLESVNGKPVTSDKNPPEISFGEKMHISGSMCNRF   70 (140)
T ss_pred             HHHHHHHHHHHHHCCCCCCC-------------CCCHHHCCCCEEEEEEECCEECCCCCCCCEEEECCCCEEEECCCCCE
T ss_conf             49999999999752389988-------------76978837854899997895367889996279867864800234650


Q ss_pred             EEEEEECCCCCEEEEEEECCCCCCCCCCCCC-CCCCC-H-----------HCCCCEEECCCCEEEEECCCCCEE
Q ss_conf             6578863689736889713667777145436-77300-0-----------002100333871899982899879
Q gi|254781045|r   76 IGAWKVSYRDVDCKMILTLTRFKKNFRGTAR-SCHGR-L-----------ASLAAWNIIDEDSFELKNKSGQTI  136 (162)
Q Consensus        76 ~G~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~-gC~g~-L-----------~~i~aW~v~G~~vl~L~D~sG~~v  136 (162)
                      .|..+++.+      .|+-.+     =|.+| -|+++ +           ...+.-++++ +.|.|.+....-+
T Consensus        71 ~G~~~l~~~------~L~v~~-----lasT~m~C~dp~l~~~E~~i~~~L~~~a~v~l~~-~~LtL~~~~~tL~  132 (140)
T PRK10449         71 SGEGKLSDG------ELTVKG-----LAMTRMMCADPQLNELDNTISEMLKKGAQVDLTA-NQLTLATAEQTLV  132 (140)
T ss_pred             EEEEEECCC------EEEECH-----HHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC-CEEEEECCCCEEE
T ss_conf             603898598------799830-----1100546898689999999999962476799948-9899956985899


No 43 
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=50.32  E-value=18  Score=16.93  Aligned_cols=19  Identities=26%  Similarity=0.473  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHCCCEE
Q ss_conf             02369999999998405412
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~   23 (162)
                      .|++++.| +.+++|+||+.
T Consensus         7 ~~~~l~~l-~~~~~L~gC~~   25 (385)
T PRK09578          7 RRLALAAL-VAAFALAGCGK   25 (385)
T ss_pred             HHHHHHHH-HHHHHHHCCCC
T ss_conf             99999999-99999816799


No 44 
>PRK11679 lipoprotein; Provisional
Probab=48.87  E-value=21  Score=16.47  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHCCCEEE---------CCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf             023699999999984054120---------3788777876668887-----434573589988877---88654466763
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQI---------DFGNIFFKKPEISLPP-----SVESEILLPPIPEEE---FDQDDISVPSK   66 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~---------~~~~~~~~p~~a~p~~-----~V~s~~l~pp~~~~~---~~~~~~~~p~~   66 (162)
                      ++...+.-.+++++|++|++.         +|.+...+|++.--+|     +.++....=|..+..   ...-++-||..
T Consensus         8 ~~~~~v~~~~lv~~L~ACss~~~~rrQa~gd~~Yl~~~~~~~L~vPagl~~P~~~~~Y~IP~~~~~g~vGk~lDIRpP~q   87 (345)
T PRK11679          8 SRLAKVAGVSLVLLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPVQNGDYDIPVGNGSGAVGKALDIRPPAQ   87 (345)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf             03777888999999986079757777635982110188886654898757778898420687666665442357688647


Q ss_pred             CCCCCCHHEEEEEEECCCCCEEEEEEECC
Q ss_conf             22377011365788636897368897136
Q gi|254781045|r   67 DNNAIRMGIIGAWKVSYRDVDCKMILTLT   95 (162)
Q Consensus        67 a~~~~r~sl~G~W~vs~~g~sC~v~Lt~t   95 (162)
                      +..+.    -|++ +-.++..-++++...
T Consensus        88 vL~l~----~gsr-~e~~g~~~~~lv~~~  111 (345)
T PRK11679         88 PLALI----SGAR-TQFNGDTATLLLENG  111 (345)
T ss_pred             HHCCC----CCCE-EEECCCEEEEEEECC
T ss_conf             64547----8836-873797179998378


No 45 
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family; InterPro: IPR005699    This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and Pectobacterium chrysanthemi, and the functionally uncharacterised E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport.
Probab=48.29  E-value=9  Score=18.70  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69999999998405412037887778766688874345735899
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPP   50 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~~~~~~~~~~p~~a~p~~~V~s~~l~pp   50 (162)
                      .++.+ ++++.++|||+..---+-+.-..|+=+++-|=+||.+.
T Consensus        11 ~~~~~-~~~v~lsgCqtPaPvqn~~~~~~a~Vp~~eQleQlAS~   53 (136)
T TIGR01004        11 VVLSL-LVVVLLSGCQTPAPVQNRAIRKAAAVPASEQLEQLASV   53 (136)
T ss_pred             HHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999-99998640478998888755557878877789999999


No 46 
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=47.70  E-value=13  Score=17.69  Aligned_cols=14  Identities=21%  Similarity=0.531  Sum_probs=9.3

Q ss_pred             HHHHHHCCCEEECC
Q ss_conf             99998405412037
Q gi|254781045|r   13 MLTLFSHGCTQIDF   26 (162)
Q Consensus        13 ~~~l~laGCq~~~~   26 (162)
                      .+.++|+||++...
T Consensus         9 ~~~l~LagCas~~~   22 (26)
T pfam08139         9 LALLLLAGCASXXX   22 (26)
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99999823320013


No 47 
>PRK10760 murein hydrolase B; Provisional
Probab=47.49  E-value=22  Score=16.33  Aligned_cols=12  Identities=17%  Similarity=0.390  Sum_probs=9.1

Q ss_pred             HHHHHHHCCCEE
Q ss_conf             999998405412
Q gi|254781045|r   12 YMLTLFSHGCTQ   23 (162)
Q Consensus        12 ~~~~l~laGCq~   23 (162)
                      ..+.++|++|++
T Consensus         8 ~~~~~~l~~css   19 (357)
T PRK10760          8 LPLFVLLAACSS   19 (357)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998518


No 48 
>PRK11548 hypothetical protein; Provisional
Probab=46.67  E-value=14  Score=17.48  Aligned_cols=24  Identities=17%  Similarity=0.476  Sum_probs=13.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf             9200236999999999840541203
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~~   25 (162)
                      |+.-+.....+ ++.++++||+..+
T Consensus         1 m~~k~l~~a~l-l~~lllsgCS~~~   24 (113)
T PRK11548          1 MRCKTLTAAAA-VLLMLTAGCSTLE   24 (113)
T ss_pred             CCHHHHHHHHH-HHHHHHCCCCCCC
T ss_conf             92578899999-9999980115787


No 49 
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=46.39  E-value=23  Score=16.23  Aligned_cols=15  Identities=27%  Similarity=0.428  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHCCCEE
Q ss_conf             999999998405412
Q gi|254781045|r    9 LNLYMLTLFSHGCTQ   23 (162)
Q Consensus         9 ~~l~~~~l~laGCq~   23 (162)
                      +.+.+.+++|+||..
T Consensus         4 l~~~~a~l~LsGCa~   18 (231)
T PRK12788          4 LVAILACLALAGCAN   18 (231)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999764038


No 50 
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=44.74  E-value=15  Score=17.29  Aligned_cols=19  Identities=37%  Similarity=0.672  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHCCCEEE
Q ss_conf             23699999999984054120
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~   24 (162)
                      |++...| +..|+|.||+..
T Consensus         3 K~i~~il-~~~llL~GCs~m   21 (304)
T pfam07901         3 KLIKLIL-IATLLLSGCSTT   21 (304)
T ss_pred             HHHHHHH-HHHHHHCCCCCC
T ss_conf             1899999-999997133445


No 51 
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=44.67  E-value=13  Score=17.71  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             920023699999999984054120
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      |..-|+.+..|+..+|+|.||..+
T Consensus         1 m~~kk~~~~~~~~~~l~lsGC~a~   24 (243)
T PRK13731          1 MKTKKLMMVALVSSTLALSGCGAM   24 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             933775799999999997156876


No 52 
>pfam05590 DUF769 Xylella fastidiosa protein of unknown function (DUF769). This family consists of several uncharacterized hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=44.15  E-value=21  Score=16.39  Aligned_cols=31  Identities=16%  Similarity=0.039  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHCCCEEE-CCCCCCCCCCCCCCC
Q ss_conf             9999999984054120-378877787666888
Q gi|254781045|r    9 LNLYMLTLFSHGCTQI-DFGNIFFKKPEISLP   39 (162)
Q Consensus         9 ~~l~~~~l~laGCq~~-~~~~~~~~p~~a~p~   39 (162)
                      .+|...-|+|+||++- -.++.--+|..|-|=
T Consensus         9 ~SllaAslLLagCSsgPpIDsrTGKPMmagPw   40 (279)
T pfam05590         9 CSLLAASLLLAGCSSGPPIDSRTGKPMMAGPW   40 (279)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             69999999972378899866777984336886


No 53 
>PRK11443 hypothetical protein; Provisional
Probab=44.15  E-value=13  Score=17.63  Aligned_cols=13  Identities=31%  Similarity=0.618  Sum_probs=10.0

Q ss_pred             HHHHHHHHCCCEE
Q ss_conf             9999998405412
Q gi|254781045|r   11 LYMLTLFSHGCTQ   23 (162)
Q Consensus        11 l~~~~l~laGCq~   23 (162)
                      +.+++|+|+|||-
T Consensus         6 ~~~~~lll~GCq~   18 (120)
T PRK11443          6 APLLALLVSGCQI   18 (120)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999966678


No 54 
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=43.59  E-value=25  Score=15.96  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf             38718999828998799999548973220113789618873
Q gi|254781045|r  121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS  161 (162)
Q Consensus       121 ~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs  161 (162)
                      .|+|.++|.|.+|+.....   .+.+|.|++-..-+.|.|.
T Consensus        70 i~~D~y~FrD~sGeI~VeI---dd~~w~g~tv~P~dkV~I~  107 (128)
T COG3111          70 IGDDRYVFRDASGEINVDI---DDKVWNGQTVTPKDKVRIQ  107 (128)
T ss_pred             ECCCEEEEECCCCCEEEEE---CCCCCCCCCCCCCCEEEEE
T ss_conf             0783699975896199981---6011389706856689997


No 55 
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=41.99  E-value=27  Score=15.81  Aligned_cols=28  Identities=11%  Similarity=0.083  Sum_probs=14.8

Q ss_pred             HHHHHHHHCCCEEECCCCCCCCCCCCCC
Q ss_conf             9999998405412037887778766688
Q gi|254781045|r   11 LYMLTLFSHGCTQIDFGNIFFKKPEISL   38 (162)
Q Consensus        11 l~~~~l~laGCq~~~~~~~~~~p~~a~p   38 (162)
                      |.++.++|+||....=....-.|..+.|
T Consensus        23 ~~~~~~~l~gC~~~~~~p~~~~p~~a~p   50 (246)
T PRK12699         23 LIVMLALVGGCSLPTPAPKVQQPMSARP   50 (246)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999998604468999876788754689


No 56 
>PRK02944 OxaA-like protein precursor; Validated
Probab=40.91  E-value=28  Score=15.71  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHCCCEEEC
Q ss_conf             999999999840541203
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQID   25 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~~   25 (162)
                      +..+.+++++|+||.+++
T Consensus         8 ~~~~~~~~~~lsgC~~~~   25 (255)
T PRK02944          8 LAMVVALMAILAGCSEVN   25 (255)
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             999999999996246889


No 57 
>PRK11627 hypothetical protein; Provisional
Probab=39.72  E-value=17  Score=16.96  Aligned_cols=18  Identities=28%  Similarity=0.575  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHCCCEE
Q ss_conf             2369999999998405412
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~   23 (162)
                      |..++.| ...++|+||++
T Consensus         3 kk~~~~l-~a~~lL~gCas   20 (192)
T PRK11627          3 KKILFPL-VALFMLAGCAT   20 (192)
T ss_pred             HHHHHHH-HHHHHHHHHCC
T ss_conf             8799999-99999986069


No 58 
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=38.46  E-value=19  Score=16.68  Aligned_cols=12  Identities=25%  Similarity=0.750  Sum_probs=9.3

Q ss_pred             HHHHHHCCCEEE
Q ss_conf             999984054120
Q gi|254781045|r   13 MLTLFSHGCTQI   24 (162)
Q Consensus        13 ~~~l~laGCq~~   24 (162)
                      +++++|+||+++
T Consensus        10 ~~~llLsgCat~   21 (203)
T PRK00022         10 LAALLLAGCASL   21 (203)
T ss_pred             HHHHHHHHCCCC
T ss_conf             999998661489


No 59 
>PRK10796 LPS-assembly lipoprotein RlpB; Provisional
Probab=37.77  E-value=22  Score=16.38  Aligned_cols=27  Identities=26%  Similarity=0.488  Sum_probs=15.7

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCE-EECCCCC
Q ss_conf             9200236999999999840541-2037887
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCT-QIDFGNI   29 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq-~~~~~~~   29 (162)
                      |-|-+-.|++|  .+|+++||- ..+....
T Consensus         1 ~r~l~~l~l~l--avll~agCGFhLRg~~~   28 (196)
T PRK10796          1 MRYLATLLLSL--AVLVTAGCGWHLRGTTQ   28 (196)
T ss_pred             CHHHHHHHHHH--HHHHHCCCCCEECCCCC
T ss_conf             95699999999--99997476715768999


No 60 
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545   Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein.   This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=37.28  E-value=23  Score=16.18  Aligned_cols=16  Identities=31%  Similarity=0.353  Sum_probs=13.7

Q ss_pred             EEECCCCCEEEEEEEC
Q ss_conf             9982899879999954
Q gi|254781045|r  127 ELKNKSGQTIIVFYKT  142 (162)
Q Consensus       127 ~L~D~sG~~v~~l~~s  142 (162)
                      +|+|+.|..|+.|+.+
T Consensus       317 VLydk~G~~Vaqfk~T  332 (407)
T TIGR00495       317 VLYDKDGEFVAQFKFT  332 (407)
T ss_pred             CCCCCCCCEEEEEEEE
T ss_conf             3122799889988878


No 61 
>PRK02463 OxaA-like protein precursor; Provisional
Probab=36.39  E-value=31  Score=15.44  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=13.6

Q ss_pred             HHHHHHHH-HHHHHHHCCCEEEC
Q ss_conf             02369999-99999840541203
Q gi|254781045|r    4 YRFILLNL-YMLTLFSHGCTQID   25 (162)
Q Consensus         4 ~~~~~~~l-~~~~l~laGCq~~~   25 (162)
                      -|+.++++ ..++++|+||.+++
T Consensus         6 k~~~~~~~~~~~~l~LsgC~~~~   28 (307)
T PRK02463          6 KRILFSGLALSMLLTLTGCVGRD   28 (307)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999996346899


No 62 
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=36.38  E-value=22  Score=16.39  Aligned_cols=19  Identities=16%  Similarity=0.363  Sum_probs=16.6

Q ss_pred             CCEEEEEEECCCCCCCCCC
Q ss_conf             9736889713667777145
Q gi|254781045|r   85 DVDCKMILTLTRFKKNFRG  103 (162)
Q Consensus        85 g~sC~v~Lt~t~~~~Gyra  103 (162)
                      |..+.++++-++|+..|.-
T Consensus       105 GADAvLYvtI~~ygt~Y~V  123 (215)
T pfam05643       105 GNDAVLYITVTEYGTSYQI  123 (215)
T ss_pred             CCCEEEEEEEECCCCEEEE
T ss_conf             8776899871024737999


No 63 
>pfam01298 Lipoprotein_5 Transferrin binding protein-like solute binding protein. This family of proteins are distantly related to other families of solute binding proteins.
Probab=36.28  E-value=33  Score=15.26  Aligned_cols=28  Identities=18%  Similarity=0.136  Sum_probs=15.8

Q ss_pred             CCCH-HHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf             9200-23699999999984054120378877
Q gi|254781045|r    1 MHFY-RFILLNLYMLTLFSHGCTQIDFGNIF   30 (162)
Q Consensus         1 m~f~-~~~~~~l~~~~l~laGCq~~~~~~~~   30 (162)
                      ||+- +...+.|  .+++|.-|.---.++++
T Consensus         1 M~~~l~~~~lal--~~~LLSAC~GGGGGSfd   29 (589)
T pfam01298         1 MNIPLNKLALAL--AAGLLSACSGGGGGSFD   29 (589)
T ss_pred             CCCCCCHHHHHH--HHHHHHHHCCCCCCCCC
T ss_conf             965654549999--99999973468898887


No 64 
>pfam09347 DUF1989 Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.
Probab=36.15  E-value=33  Score=15.25  Aligned_cols=12  Identities=8%  Similarity=0.324  Sum_probs=4.2

Q ss_pred             ECCCCCEEEEEE
Q ss_conf             828998799999
Q gi|254781045|r  129 KNKSGQTIIVFY  140 (162)
Q Consensus       129 ~D~sG~~v~~l~  140 (162)
                      +...|++++.+.
T Consensus        66 ~S~~~rpm~tIv   77 (167)
T pfam09347        66 YSNMGRPMLTIV   77 (167)
T ss_pred             ECCCCCEEEEEE
T ss_conf             818997689998


No 65 
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=35.49  E-value=34  Score=15.18  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCC
Q ss_conf             99999999984054120378877787
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQIDFGNIFFKK   33 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~~~~~~~~~p   33 (162)
                      ++.+ +++++|+||+....+.+-++|
T Consensus         4 ~~~~-~~~~~l~gCs~~~~~~~~~~p   28 (377)
T TIGR03300         4 ALVI-ALAALLSGCSWFSSKDEEPQP   28 (377)
T ss_pred             HHHH-HHHHHHHHCCCCCCCCCCCCC
T ss_conf             8999-999998556576799887899


No 66 
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=35.09  E-value=14  Score=17.53  Aligned_cols=17  Identities=18%  Similarity=0.655  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHCCCEE
Q ss_conf             69999999998405412
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~   23 (162)
                      .+..+.+++++|++||-
T Consensus         5 ~~~~i~~~~~~L~aCQa   21 (46)
T pfam02402         5 LFIGILLLTVLLSACQA   21 (46)
T ss_pred             EEHHHHHHHHHHHHHHH
T ss_conf             01399999999998555


No 67 
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.76  E-value=30  Score=15.45  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             CCCCEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             02100333871899982899879999954
Q gi|254781045|r  114 SLAAWNIIDEDSFELKNKSGQTIIVFYKT  142 (162)
Q Consensus       114 ~i~aW~v~G~~vl~L~D~sG~~v~~l~~s  142 (162)
                      .---|++.-   . |.|+.|++|.||-+.
T Consensus       122 ~~IkWNFtK---F-Lvdr~G~VV~Rf~p~  146 (162)
T COG0386         122 KDIKWNFTK---F-LVDRDGNVVKRFSPK  146 (162)
T ss_pred             CCCCEEEEE---E-EECCCCCEEEEECCC
T ss_conf             764301378---8-786999689850899


No 68 
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=34.57  E-value=26  Score=15.83  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             69999999998405412037887
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQIDFGNI   29 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~~~~~~~   29 (162)
                      .+|+.+.....|+||..++-..+
T Consensus         4 ~~l~aaa~~~~LaGCt~~d~~~~   26 (109)
T PRK11251          4 GILSAAAVLTMLAGCTAYDRNPV   26 (109)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             58899999999971447767813


No 69 
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=34.53  E-value=35  Score=15.09  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             369999999998405412037887
Q gi|254781045|r    6 FILLNLYMLTLFSHGCTQIDFGNI   29 (162)
Q Consensus         6 ~~~~~l~~~~l~laGCq~~~~~~~   29 (162)
                      +.+|.|...+++|+||.-.-+++.
T Consensus        10 ~~~l~l~~~~~lLsGC~~~~LdPk   33 (305)
T PRK10525         10 LGWLSLFAGTVLLSGCNSALLDPK   33 (305)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999998667876328999


No 70 
>pfam03534 SpvB Salmonella virulence plasmid 65kDa B protein.
Probab=34.04  E-value=36  Score=15.04  Aligned_cols=56  Identities=18%  Similarity=0.376  Sum_probs=38.3

Q ss_pred             EEEECCCCCEEEEEEECCCCCCCCCCCCC-CCCCCHHCCCCEEECCCCEEEEECCCCCEEEEEEECCCCC
Q ss_conf             78863689736889713667777145436-7730000021003338718999828998799999548973
Q gi|254781045|r   78 AWKVSYRDVDCKMILTLTRFKKNFRGTAR-SCHGRLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQS  146 (162)
Q Consensus        78 ~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~-gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~gr  146 (162)
                      -|.+-+.++.+-++        |..+.+| .=|.+-..|..|.+-  +.+   |..|+.|-=.|+.|+..
T Consensus       133 fW~v~s~dg~~~~~--------Gk~~~aRIadP~~p~rI~~WLLe--es~---d~~Gn~I~Y~Y~~ED~~  189 (293)
T pfam03534       133 FWLIHSADGQLHLL--------GKTAQARIADPQNPTRIAEWLLE--ESV---SPTGEHIYYQYRAEDDT  189 (293)
T ss_pred             EEEEECCCCCEEEC--------CCCHHHCCCCCCCCCHHHEEEEE--EEE---CCCCCEEEEEECCCCCC
T ss_conf             58998689977977--------68866515698984532146243--378---79999899987066556


No 71 
>PRK10718 hypothetical protein; Provisional
Probab=33.83  E-value=19  Score=16.66  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=16.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEECCCC-CCCCCC
Q ss_conf             200236999999999840541203788-777876
Q gi|254781045|r    2 HFYRFILLNLYMLTLFSHGCTQIDFGN-IFFKKP   34 (162)
Q Consensus         2 ~f~~~~~~~l~~~~l~laGCq~~~~~~-~~~~p~   34 (162)
                      .-.|+.++   ...|+|+||++.+.=+ +...|.
T Consensus         2 ~~lr~~l~---~~~llLsGCst~s~~sWSsl~P~   32 (191)
T PRK10718          2 KSLRLLLL---ALPLLLTGCSTMSSVNWSAANPW   32 (191)
T ss_pred             CCCCCHHH---HHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             85310231---22476406566688642236861


No 72 
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein; InterPro: IPR005675    This model represents largely uncharacterised proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distinct. ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=33.35  E-value=17  Score=17.05  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCHHCCCCEEECCCCEEEEECCCCCEE
Q ss_conf             889713667777145436773000002100333871899982899879
Q gi|254781045|r   89 KMILTLTRFKKNFRGTARSCHGRLASLAAWNIIDEDSFELKNKSGQTI  136 (162)
Q Consensus        89 ~v~Lt~t~~~~Gyra~~~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v  136 (162)
                      +|.---+-|.+||||+++=   .|.-...=.-.|-|-|+|-|.+|++.
T Consensus       137 ~VIyDAEHfFDGYkaN~eY---AL~~L~~A~~aGAdwlVlcDTNGGTL  181 (543)
T TIGR00977       137 EVIYDAEHFFDGYKANPEY---ALKTLKVAEKAGADWLVLCDTNGGTL  181 (543)
T ss_pred             EEEEECCCCCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             2563020024634578689---99999999846982899950787998


No 73 
>PRK09810 entericidin A; Provisional
Probab=33.13  E-value=31  Score=15.42  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECC
Q ss_conf             02369999999998405412037
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQIDF   26 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~~~   26 (162)
                      -|.+++.| +...+|+||.+-+.
T Consensus         3 krli~lil-~~~~ll~gcntarg   24 (41)
T PRK09810          3 KRLIVLVL-LASTLLTGCNTARG   24 (41)
T ss_pred             HHHHHHHH-HHHHHHHCCCCCCC
T ss_conf             89999999-99999825621221


No 74 
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=32.91  E-value=37  Score=14.92  Aligned_cols=14  Identities=21%  Similarity=0.705  Sum_probs=5.1

Q ss_pred             CCCCC-HHCCCCEEE
Q ss_conf             77300-000210033
Q gi|254781045|r  107 SCHGR-LASLAAWNI  120 (162)
Q Consensus       107 gC~g~-L~~i~aW~v  120 (162)
                      +|..- +.+++.|.+
T Consensus       113 nC~dNl~~al~~~Gl  127 (198)
T TIGR03424       113 ACRDNFLLAIAKYGL  127 (198)
T ss_pred             CHHHHHHHHHHHHCC
T ss_conf             528999999988099


No 75 
>pfam06572 DUF1131 Protein of unknown function (DUF1131). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=32.60  E-value=27  Score=15.78  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=14.0

Q ss_pred             HHHHHHHHCCCEEECCCC-CCCCCC
Q ss_conf             999999840541203788-777876
Q gi|254781045|r   11 LYMLTLFSHGCTQIDFGN-IFFKKP   34 (162)
Q Consensus        11 l~~~~l~laGCq~~~~~~-~~~~p~   34 (162)
                      |..+.|+|+||++.+.=+ ++..|.
T Consensus         8 l~~~~llL~GCst~s~fsWSslsP~   32 (192)
T pfam06572         8 LLALPLLLTGCSTLSNFSWSSLSPW   32 (192)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             8776688606556688542226872


No 76 
>KOG0175 consensus
Probab=32.19  E-value=35  Score=15.05  Aligned_cols=33  Identities=12%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             HCCCCEEECCCCEEEEECCCC-CEEEEEEECCCCC
Q ss_conf             002100333871899982899-8799999548973
Q gi|254781045|r  113 ASLAAWNIIDEDSFELKNKSG-QTIIVFYKTAEQS  146 (162)
Q Consensus       113 ~~i~aW~v~G~~vl~L~D~sG-~~v~~l~~s~~gr  146 (162)
                      .+|.+||-+|-.++ +.|..| +.-+++.++++|.
T Consensus       170 tMi~G~Dk~GP~ly-YVDseG~Rl~G~~FSVGSGs  203 (285)
T KOG0175         170 TMIAGWDKKGPGLY-YVDSEGTRLSGDLFSVGSGS  203 (285)
T ss_pred             EEEEECCCCCCCEE-EECCCCCCCCCCEEEECCCC
T ss_conf             15762068898169-98588987047667506898


No 77 
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.10  E-value=29  Score=15.55  Aligned_cols=19  Identities=21%  Similarity=0.466  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHCCCEE
Q ss_conf             2369999999998405412
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~   23 (162)
                      ++.+..+++..+.|+||..
T Consensus         5 ~m~l~Avvlg~lllAGc~s   23 (78)
T COG4238           5 KMTLGAVVLGSLLLAGCSS   23 (78)
T ss_pred             EHHHHHHHHHHHHHHHCCC
T ss_conf             0127899987799970110


No 78 
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family; InterPro: IPR003282 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia.   The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell  and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself, type III subunits in the outer membrane translocate secreted proteins through a channel-like structure.    One of the outer membrane protein subunit families, termed "K" here for nomenclature purposes, aids in the structural assembly of the invasion complex . It is also described as a lipoprotein. Members of this family include the Salmonella PrgK and SsaJ genes, MxiJ from Shigella, YscJ from Yersinia, and from the plant enteropathogens NolT (Rhizobium) and HrcJ Erwinia). The flagellar M-ring protein FliF also shares a low level of similarity, presumably due to evolution of the type III secretion system from the flagellar biosynthetic pathway.; GO: 0009306 protein secretion.
Probab=32.05  E-value=30  Score=15.52  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=14.2

Q ss_pred             HHHHHHHHHCCCEEEC--CCCCC
Q ss_conf             9999999840541203--78877
Q gi|254781045|r   10 NLYMLTLFSHGCTQID--FGNIF   30 (162)
Q Consensus        10 ~l~~~~l~laGCq~~~--~~~~~   30 (162)
                      -+++++++|+||....  |.+.+
T Consensus         6 ~~~~l~llL~GC~~~~~Ly~gL~   28 (203)
T TIGR02544         6 LLLLLLLLLTGCKVDLELYSGLS   28 (203)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99999999717874056504789


No 79 
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=31.97  E-value=32  Score=15.34  Aligned_cols=22  Identities=32%  Similarity=0.609  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHCCCEEECCCC
Q ss_conf             6999999999840541203788
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQIDFGN   28 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~~~~~~   28 (162)
                      .++.+.+..+.|+||-|.+.=+
T Consensus         7 ~~~~l~~~~~~lagCNTv~G~G   28 (42)
T pfam08085         7 LLLALLLLALVLAGCNTVAGAG   28 (42)
T ss_pred             HHHHHHHHHHHHHCCHHHHHCC
T ss_conf             9999999999986122211121


No 80 
>KOG0263 consensus
Probab=30.83  E-value=40  Score=14.71  Aligned_cols=47  Identities=9%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             HCCCCEEECCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEE
Q ss_conf             002100333871899982899879999954897322011378961887
Q gi|254781045|r  113 ASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVII  160 (162)
Q Consensus       113 ~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisL  160 (162)
                      .-|.-||+.-.++||+...--.+|.++.-+..|||.+.-.+ ..-|-|
T Consensus       557 ~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-d~~I~i  603 (707)
T KOG0263         557 RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-DGLIKI  603 (707)
T ss_pred             CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCC-CCCEEE
T ss_conf             32898873778579976278886689997578756741465-784899


No 81 
>COG4380 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.41  E-value=31  Score=15.38  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHCCCEEE
Q ss_conf             023699999999984054120
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~   24 (162)
                      +++.++.+ ..+++++|||..
T Consensus         1 ~~~l~~~~-~~vl~ls~c~~~   20 (216)
T COG4380           1 MKPLILGL-AAVLALSACQVQ   20 (216)
T ss_pred             CHHHHHHH-HHHHHHHHCCCC
T ss_conf             90689999-999998653577


No 82 
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.35  E-value=39  Score=14.77  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             69999999998405412037887
Q gi|254781045|r    7 ILLNLYMLTLFSHGCTQIDFGNI   29 (162)
Q Consensus         7 ~~~~l~~~~l~laGCq~~~~~~~   29 (162)
                      +++.|.++.|+++||++++-+.+
T Consensus         8 ~i~~lll~lllva~C~~s~~~~~   30 (310)
T COG4594           8 IILTLLLLLLLVAACSSSDNNQK   30 (310)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999977147676555


No 83 
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333   Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=30.15  E-value=23  Score=16.25  Aligned_cols=20  Identities=25%  Similarity=0.539  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHCCCE-EECCCC
Q ss_conf             99999999840541-203788
Q gi|254781045|r    9 LNLYMLTLFSHGCT-QIDFGN   28 (162)
Q Consensus         9 ~~l~~~~l~laGCq-~~~~~~   28 (162)
                      |.++.+.++|.||+ .-=+++
T Consensus         1 L~~~~~~~lLsGCNn~~LL~P   21 (228)
T TIGR01433         1 LSLILASLLLSGCNNLVLLDP   21 (228)
T ss_pred             CHHHHHHHHHHCCCCCCCCCC
T ss_conf             857789998612567655388


No 84 
>PRK10053 hypothetical protein; Provisional
Probab=30.14  E-value=41  Score=14.64  Aligned_cols=38  Identities=18%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf             38718999828998799999548973220113789618873
Q gi|254781045|r  121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS  161 (162)
Q Consensus       121 ~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs  161 (162)
                      .|+|.+.|+|.+|......   ...+|.|++-.-...|.|.
T Consensus        74 lg~d~Y~FrD~TG~I~VeI---d~~~W~G~~VtP~d~V~I~  111 (130)
T PRK10053         74 KGDDRYVFRDKSGEINVII---PAAVFDGREVQPDQMININ  111 (130)
T ss_pred             CCCCEEEEECCCCCEEEEE---CHHHCCCCCCCCCCEEEEE
T ss_conf             4883489977997599996---7777489785999878998


No 85 
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360    Proteins in this entry are designated PilF  and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=29.52  E-value=23  Score=16.25  Aligned_cols=15  Identities=27%  Similarity=0.428  Sum_probs=10.8

Q ss_pred             HHHHHHHHCCCEEEC
Q ss_conf             999999840541203
Q gi|254781045|r   11 LYMLTLFSHGCTQID   25 (162)
Q Consensus        11 l~~~~l~laGCq~~~   25 (162)
                      +++++++|+||++..
T Consensus         2 ~l~~~~~l~GC~~~~   16 (247)
T TIGR02521         2 ALVLLLALTGCVTTP   16 (247)
T ss_pred             HHHHHHHHHCCCCCC
T ss_conf             887846785157887


No 86 
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.44  E-value=37  Score=14.97  Aligned_cols=20  Identities=20%  Similarity=0.245  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHCCCEE
Q ss_conf             02369999999998405412
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~   23 (162)
                      .+.+-+.|.+.+++|+||..
T Consensus         5 ktlsr~al~~av~~LagC~~   24 (121)
T COG4259           5 KTLSRLALLLAVAALAGCGG   24 (121)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
T ss_conf             88999999999999988057


No 87 
>TIGR01840 esterase_phb esterase, PHB depolymerase family; InterPro: IPR010126   This entry describes a group of lipases of the ab-hydrolase family. They include bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, and feruloyl esterases from fungi.; GO: 0005576 extracellular region.
Probab=28.97  E-value=8.5  Score=18.87  Aligned_cols=12  Identities=50%  Similarity=0.778  Sum_probs=8.3

Q ss_pred             HHHHHHCCCEEE
Q ss_conf             999984054120
Q gi|254781045|r   13 MLTLFSHGCTQI   24 (162)
Q Consensus        13 ~~~l~laGCq~~   24 (162)
                      -|+|+||||.+|
T Consensus        19 aLV~~LHGC~QT   30 (231)
T TIGR01840        19 ALVLALHGCGQT   30 (231)
T ss_pred             CEEEEECCCCCC
T ss_conf             347762277411


No 88 
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=28.92  E-value=32  Score=15.29  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=23.0

Q ss_pred             ECCCCEEEEECCCCCEEEEEEECCCCCEE-CCC
Q ss_conf             33871899982899879999954897322-011
Q gi|254781045|r  120 IIDEDSFELKNKSGQTIIVFYKTAEQSFE-GSF  151 (162)
Q Consensus       120 v~G~~vl~L~D~sG~~v~~l~~s~~grfe-G~t  151 (162)
                      +.|.+ |..+--+|+.+...++....+|- |++
T Consensus       109 ~~Gve-l~IrkDdG~~i~vvQk~d~~~~~vGeR  140 (154)
T COG3133         109 TQGVE-LEIRKDDGQTIVVVQKQDQTRFSVGER  140 (154)
T ss_pred             CCCEE-EEEEECCCCEEEEEEECCCCCCCCCCE
T ss_conf             78648-999945994899998328731477648


No 89 
>pfam12079 DUF3558 Protein of unknown function (DUF3558). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 177 to 195 amino acids in length.
Probab=28.88  E-value=27  Score=15.78  Aligned_cols=114  Identities=11%  Similarity=0.050  Sum_probs=49.0

Q ss_pred             HHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CC-CCCCCCCCHHEEEEEEECCCCCEEEEE
Q ss_conf             984054120378877787666888743457358998887-78865446--67-632237701136578863689736889
Q gi|254781045|r   16 LFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEE-EFDQDDIS--VP-SKDNNAIRMGIIGAWKVSYRDVDCKMI   91 (162)
Q Consensus        16 l~laGCq~~~~~~~~~~p~~a~p~~~V~s~~l~pp~~~~-~~~~~~~~--~p-~~a~~~~r~sl~G~W~vs~~g~sC~v~   91 (162)
                      +.|+||.++.-+.-.+....+.|.++=+..+.+|-+.+= ..+.+.+.  .. .......+....=.|.....-.-=.|.
T Consensus         2 ~~laGCg~~~~G~a~~~~~~~~~~~~~~~~~~~p~f~~C~~ltd~~l~~~~g~~~~~~~~~~g~gC~W~~~~~~~g~~vs   81 (168)
T pfam12079         2 VVLAGCGSTVSGTASPTGSAAAPDPSDSAAQFGPFFDPCGGITDDTLAELTGVDPLVPVSFSGAGCSWDAAGAIGGPDVS   81 (168)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCEEE
T ss_conf             58841578768972777778888885433458754555579887999998487765333131836788358986663189


Q ss_pred             EECCCCCCCCCCCCCCCCCCH--HCCCCEEECCCCEEEEECCC
Q ss_conf             713667777145436773000--00210033387189998289
Q gi|254781045|r   92 LTLTRFKKNFRGTARSCHGRL--ASLAAWNIIDEDSFELKNKS  132 (162)
Q Consensus        92 Lt~t~~~~Gyra~~~gC~g~L--~~i~aW~v~G~~vl~L~D~s  132 (162)
                      +   .|..|.....+.=..++  ..+.-.++.|-+-++-++..
T Consensus        82 ~---~w~~g~~~~~ER~~~~~~~~~v~~i~I~G~~gf~a~~~~  121 (168)
T pfam12079        82 F---SWYRGSTVDRERELAELAGYEVTDIEIGGRPGFVARDEG  121 (168)
T ss_pred             E---EEECCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEECCC
T ss_conf             8---873478606677788761784103687483354885699


No 90 
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=28.36  E-value=44  Score=14.45  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=28.3

Q ss_pred             CCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEEEEE
Q ss_conf             8718999828998799999548973220113789618873
Q gi|254781045|r  122 DEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIIS  161 (162)
Q Consensus       122 G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pisLs  161 (162)
                      |+|-++|.|.+|+....   -.+.+|.|+.-.....|.|.
T Consensus        71 ~~d~Y~F~D~TG~I~Ve---Id~~~w~G~~v~p~~kVrI~  107 (126)
T pfam04076        71 GDDEYEFRDASGTIKVD---IDDRVWNGQEVQPKDKVKIT  107 (126)
T ss_pred             CCCEEEEECCCCCEEEE---ECHHHCCCCCCCCCCEEEEE
T ss_conf             89538997899639999---68888389817999989999


No 91 
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
Probab=27.43  E-value=43  Score=14.56  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=12.7

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf             92002369999999998405412
Q gi|254781045|r    1 MHFYRFILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         1 m~f~~~~~~~l~~~~l~laGCq~   23 (162)
                      |+-++..++-+ ++.+.++||++
T Consensus         1 M~~~~~a~~~l-~al~~~sgCss   22 (159)
T COG3521           1 MNSSRKAVLAL-FALLVLSGCSS   22 (159)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHCC
T ss_conf             94257789999-99998524125


No 92 
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein,  YhcN/YlaJ family; InterPro: IPR014247   This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. .
Probab=26.74  E-value=38  Score=14.87  Aligned_cols=21  Identities=29%  Similarity=0.524  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHH--CCCEEECCCC
Q ss_conf             99999999984--0541203788
Q gi|254781045|r    8 LLNLYMLTLFS--HGCTQIDFGN   28 (162)
Q Consensus         8 ~~~l~~~~l~l--aGCq~~~~~~   28 (162)
                      |+.+.++.|+|  .||+--+-++
T Consensus         2 l~~~ll~~~~l~~tgC~~~~~~~   24 (185)
T TIGR02898         2 LFIILLLLLLLLATGCTNAQKKS   24 (185)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             68899999999873134100146


No 93 
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=26.16  E-value=49  Score=14.21  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHCCCEEE
Q ss_conf             023699999999984054120
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~   24 (162)
                      -+.-.|.|.+++++++||+..
T Consensus         4 ~~~~~~~~~~~~~~~~g~~~~   24 (319)
T PRK10957          4 APLYRLALLLLGLLLSGIAAA   24 (319)
T ss_pred             HHHHHHHHHHHHHHHCCCCCC
T ss_conf             378999999999997478755


No 94 
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=26.14  E-value=43  Score=14.56  Aligned_cols=17  Identities=35%  Similarity=0.600  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHCCCEEE
Q ss_conf             99999999984054120
Q gi|254781045|r    8 LLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         8 ~~~l~~~~l~laGCq~~   24 (162)
                      ++.+..+.+++.||+..
T Consensus         4 ~~~~~~~~~~l~sCs~~   20 (235)
T TIGR03302         4 LILLLALLLLLAGCSSK   20 (235)
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999999873899


No 95 
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=25.71  E-value=46  Score=14.38  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHCCCEEE
Q ss_conf             3699999999984054120
Q gi|254781045|r    6 FILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         6 ~~~~~l~~~~l~laGCq~~   24 (162)
                      .+++.+.+++++++||...
T Consensus         4 ~~~~~~~~~~~~l~~C~~~   22 (289)
T TIGR03659         4 LSLILLALLSLGLTGCSSS   22 (289)
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999998432899


No 96 
>pfam00541 Adeno_knob Adenoviral fibre protein (knob domain). Specific attachment of adenovirus is achieved through interactions between host-cell receptors and the adenovirus fibre protein and is mediated by the globular carboxy-terminal domain of the adenovirus fibre protein, termed the carboxy-terminal knob domain.
Probab=25.60  E-value=50  Score=14.14  Aligned_cols=52  Identities=21%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             CCCEEEEEEECCCCCCCCCCCC--CCCCCCHHCCCCEEECCCCEEEEECCCCCEE
Q ss_conf             8973688971366777714543--6773000002100333871899982899879
Q gi|254781045|r   84 RDVDCKMILTLTRFKKNFRGTA--RSCHGRLASLAAWNIIDEDSFELKNKSGQTI  136 (162)
Q Consensus        84 ~g~sC~v~Lt~t~~~~Gyra~~--~gC~g~L~~i~aW~v~G~~vl~L~D~sG~~v  136 (162)
                      ..+.|+++|.|||-|+---|.-  .+-.|.+..|..= ..--++..+.|+.|+-.
T Consensus        15 ~~~D~KLtL~LTK~Gs~Vlgtvsl~~vkg~~~~i~~~-~~~~~i~L~FD~~G~L~   68 (170)
T pfam00541        15 TEKDSKLTLVLTKCGSQVLGTVSLLGVKGTLNNITNT-TNSISIKLLFDSNGVLL   68 (170)
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEEEEECCCEEECCCC-CEEEEEEEEECCCCCCC
T ss_conf             1787179999985499899999999952420541688-34799999987999792


No 97 
>pfam03276 Gag_spuma Spumavirus gag protein.
Probab=25.60  E-value=35  Score=15.06  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             HHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             11365788636897368897136677771454367730
Q gi|254781045|r   73 MGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHG  110 (162)
Q Consensus        73 ~sl~G~W~vs~~g~sC~v~Lt~t~~~~Gyra~~~gC~g  110 (162)
                      .++-|++-+.+.+--|+|.-.++-.--|...++.+|..
T Consensus       292 ~AieGvfP~~t~d~r~RvvNAl~~~~~Gl~L~p~ec~t  329 (582)
T pfam03276       292 PAIEGVFPVTTPDLRCRVVNALTGGHPGLALTPNECGS  329 (582)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCC
T ss_conf             33222235788017788898987278764448110035


No 98 
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=25.06  E-value=51  Score=14.08  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=23.9

Q ss_pred             CHHCCCCEEECCCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCCEE
Q ss_conf             000021003338718999828998799999548973220113789618
Q gi|254781045|r  111 RLASLAAWNIIDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKV  158 (162)
Q Consensus       111 ~L~~i~aW~v~G~~vl~L~D~sG~~v~~l~~s~~grfeG~t~~~G~pi  158 (162)
                      .++..+.|.-++ +.++|.|..|+.---+.+  ++..+=.-. +|.||
T Consensus        84 ~F~e~GrW~rta-dklvLt~s~gek~yfr~~--g~~L~mLD~-~G~pI  127 (234)
T PRK10523         84 SFASYGTWARTA-DKLVLTDSKGEKSYYRAK--GDALEMLDR-EGNPI  127 (234)
T ss_pred             CHHHCCEEEECC-CEEEEECCCCCEEEEEEC--CCEEEEECC-CCCCC
T ss_conf             332246036328-858974799874013562--880467156-89802


No 99 
>COG5645 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.99  E-value=37  Score=14.92  Aligned_cols=19  Identities=47%  Similarity=0.840  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEE
Q ss_conf             23699999999984054120
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~   24 (162)
                      |.+++.+++. +.+.||.+.
T Consensus         2 r~i~l~l~v~-lllSGC~SV   20 (80)
T COG5645           2 RNILLSLMVL-LLLSGCGSV   20 (80)
T ss_pred             CEEHHHHHHH-HHHCCCCEE
T ss_conf             1532789999-983764103


No 100
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=24.94  E-value=51  Score=14.07  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             CCEEEEEEECCC---------CCCCCCC----CCCCCCCC---HHCCCCEEECCCCEEEEECCCCCE
Q ss_conf             973688971366---------7777145----43677300---000210033387189998289987
Q gi|254781045|r   85 DVDCKMILTLTR---------FKKNFRG----TARSCHGR---LASLAAWNIIDEDSFELKNKSGQT  135 (162)
Q Consensus        85 g~sC~v~Lt~t~---------~~~Gyra----~~~gC~g~---L~~i~aW~v~G~~vl~L~D~sG~~  135 (162)
                      ...|-..|+-+.         |.+|+|-    .+++--|+   -+..-.|--.|+..| ++.+.|.+
T Consensus       358 ~~~cyfaLSPEDEa~~AA~~l~~qG~R~plvlvPr~~lG~Rv~~AF~~~Wq~~gg~~v-~~~~fg~~  423 (604)
T COG3107         358 AQLCYFALSPEDEARDAANHLWDQGKRNPLVLVPRNDLGDRVANAFNQEWQKLGGGTV-LQQKFGST  423 (604)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCH
T ss_conf             5322552483377999999998706647158855047789999999999998517711-67632768


No 101
>KOG2391 consensus
Probab=24.43  E-value=52  Score=14.01  Aligned_cols=38  Identities=13%  Similarity=0.043  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             023699999999984054120378877787666888743457
Q gi|254781045|r    4 YRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESE   45 (162)
Q Consensus         4 ~~~~~~~l~~~~l~laGCq~~~~~~~~~~p~~a~p~~~V~s~   45 (162)
                      -.+-+++|+-.++++.+---..    +.++++..|.|.-+.+
T Consensus       120 pssdLv~Liq~l~a~f~~~pP~----ys~~~~~~p~p~p~~~  157 (365)
T KOG2391         120 PSSDLVGLIQELIAAFSEDPPV----YSRSLPSPPPPYPQTE  157 (365)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCC
T ss_conf             5125999999999983679964----4677899999988666


No 102
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=24.21  E-value=32  Score=15.30  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCCCE--EECCCCCC
Q ss_conf             236999999999840541--20378877
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCT--QIDFGNIF   30 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq--~~~~~~~~   30 (162)
                      |+.||.+...+|+|.||-  .++|+=+.
T Consensus         3 ~~~~l~~l~~~llLtGCAG~nSdFdCna   30 (171)
T PRK13733          3 KISLLIPLLGTLLLSGCAGTNSEFECNA   30 (171)
T ss_pred             EEEEEHHHCCEEEEECCCCCCCCCCCCC
T ss_conf             1675112026002602457775454699


No 103
>PRK13616 lipoprotein LpqB; Provisional
Probab=23.76  E-value=54  Score=13.93  Aligned_cols=16  Identities=25%  Similarity=0.627  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHCCCEEE
Q ss_conf             9999999984054120
Q gi|254781045|r    9 LNLYMLTLFSHGCTQI   24 (162)
Q Consensus         9 ~~l~~~~l~laGCq~~   24 (162)
                      ..+..++++|+||.+.
T Consensus        10 ~~~~~~~~llaGCasl   25 (590)
T PRK13616         10 AALLAVALLVAGCASL   25 (590)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999986120368


No 104
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=23.72  E-value=54  Score=13.95  Aligned_cols=24  Identities=17%  Similarity=0.441  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEECCCC
Q ss_conf             236999999999840541203788
Q gi|254781045|r    5 RFILLNLYMLTLFSHGCTQIDFGN   28 (162)
Q Consensus         5 ~~~~~~l~~~~l~laGCq~~~~~~   28 (162)
                      ||.+...++..++|.+|...+|..
T Consensus         3 k~g~~~~~~~~~LL~aCg~sd~s~   26 (147)
T COG4939           3 KYGLVGMIVALSLLTACGKSDFSK   26 (147)
T ss_pred             EEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             303659999999998706664455


No 105
>pfam10023 DUF2265 Predicted aminopeptidase (DUF2265). Members of this family of bacterial proteins comprise various hypothetical proteins and putative aminopeptidases. Their exact function, has not, as yet, been defined.
Probab=23.58  E-value=35  Score=15.10  Aligned_cols=71  Identities=17%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             HHHHHHHHCCCEEECCCCCCCCC-----CCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCC-----CCCC
Q ss_conf             99999984054120378877787-----666888743457358998---------8877886544667632-----2377
Q gi|254781045|r   11 LYMLTLFSHGCTQIDFGNIFFKK-----PEISLPPSVESEILLPPI---------PEEEFDQDDISVPSKD-----NNAI   71 (162)
Q Consensus        11 l~~~~l~laGCq~~~~~~~~~~p-----~~a~p~~~V~s~~l~pp~---------~~~~~~~~~~~~p~~a-----~~~~   71 (162)
                      |..+++.++||++..|-.-...-     ..+.|+..|-..+-.|+.         ..-.|.......|.+.     .|+.
T Consensus         3 ll~~~l~l~gC~~~~Yy~Qa~~Gq~~ll~~~~pi~~~l~dp~t~~~Lr~kL~~~~~ir~FA~~~L~Lp~~~sY~~Y~dl~   82 (338)
T pfam10023         3 LLALALLLAGCQTLGYYWQSIGGQLQLMAAARPVDDVLADPATDAKLRQRLALAQQIREFASTELALPDNASYRRYADLG   82 (338)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf             99999998688630259999977999997179799996199999999999999999999999855999998704387549


Q ss_pred             CHHEEEEEEECC
Q ss_conf             011365788636
Q gi|254781045|r   72 RMGIIGAWKVSY   83 (162)
Q Consensus        72 r~sl~G~W~vs~   83 (162)
                      |..+  .|+|..
T Consensus        83 r~~v--vwnV~A   92 (338)
T pfam10023        83 RPYV--VWNVVA   92 (338)
T ss_pred             CCCE--EEEEEE
T ss_conf             9857--999985


No 106
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=23.49  E-value=55  Score=13.90  Aligned_cols=51  Identities=12%  Similarity=0.001  Sum_probs=29.3

Q ss_pred             CCHHEEEE-EEECCCCCEEEEEEECCCCCCCCCCCCC-CCCCCHHCCCCEEEC
Q ss_conf             70113657-8863689736889713667777145436-773000002100333
Q gi|254781045|r   71 IRMGIIGA-WKVSYRDVDCKMILTLTRFKKNFRGTAR-SCHGRLASLAAWNII  121 (162)
Q Consensus        71 ~r~sl~G~-W~vs~~g~sC~v~Lt~t~~~~Gyra~~~-gC~g~L~~i~aW~v~  121 (162)
                      .|++|.|. -++...+.+-.+.|+..-...-=++..+ .+-..|..|+.+--+
T Consensus        88 lr~~l~~~gv~v~r~gd~l~l~mp~~I~F~~dsa~l~p~~~~~L~~vA~~L~~  140 (219)
T PRK10510         88 LRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKE  140 (219)
T ss_pred             HHHHHCCCCCEEEECCCEEEEECCCCCEEECCCHHCCHHHHHHHHHHHHHHHH
T ss_conf             99985128928998687789967888566188521296789999999999998


No 107
>PRK04168 hypothetical protein; Provisional
Probab=22.37  E-value=58  Score=13.76  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=17.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             20023699999999984054120
Q gi|254781045|r    2 HFYRFILLNLYMLTLFSHGCTQI   24 (162)
Q Consensus         2 ~f~~~~~~~l~~~~l~laGCq~~   24 (162)
                      ...++.+..++.++++++||...
T Consensus         4 ~~~~~~~~~~~~~~~~~~g~~~~   26 (336)
T PRK04168          4 GRRKIVIVILLLLALVFLGCVNT   26 (336)
T ss_pred             CCEEHHHHHHHHHHHHHCCCCCC
T ss_conf             53220379999999997055577


No 108
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=22.29  E-value=55  Score=13.89  Aligned_cols=21  Identities=24%  Similarity=0.169  Sum_probs=11.6

Q ss_pred             CHHHHHHHHH--HHHHHHCCCEE
Q ss_conf             0023699999--99998405412
Q gi|254781045|r    3 FYRFILLNLY--MLTLFSHGCTQ   23 (162)
Q Consensus         3 f~~~~~~~l~--~~~l~laGCq~   23 (162)
                      +-|..++.++  +++++|+||+.
T Consensus         4 ~MKK~~l~~~~~~~~l~LaaCss   26 (298)
T PRK04405          4 KMKKWALAAASAGLLLSLAGCSS   26 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78999999999999999987179


No 109
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response .; GO: 0009847 spore germination, 0016020 membrane.
Probab=21.53  E-value=60  Score=13.66  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHCCCEE
Q ss_conf             369999999998405412
Q gi|254781045|r    6 FILLNLYMLTLFSHGCTQ   23 (162)
Q Consensus         6 ~~~~~l~~~~l~laGCq~   23 (162)
                      +.++.++++.++|.||-.
T Consensus         3 ~~~~~~~~~~~lL~GCwd   20 (400)
T TIGR02887         3 LKILLLILALLLLTGCWD   20 (400)
T ss_pred             HHHHHHHHHHHHHCCCCC
T ss_conf             667899999998326656


No 110
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.26  E-value=52  Score=14.01  Aligned_cols=24  Identities=4%  Similarity=0.202  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             369999999998405412037887
Q gi|254781045|r    6 FILLNLYMLTLFSHGCTQIDFGNI   29 (162)
Q Consensus         6 ~~~~~l~~~~l~laGCq~~~~~~~   29 (162)
                      -....|.+....|++|-+.+.-+-
T Consensus         7 l~i~~vll~s~llaaCNT~rG~G~   30 (44)
T COG5510           7 LLIALVLLASTLLAACNTMRGAGK   30 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             999999999999988663002236


No 111
>pfam11873 DUF3393 Domain of unknown function (DUF3393). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is typically between 188 to 206 amino acids in length. This domain is found associated with pfam01464.
Probab=21.08  E-value=42  Score=14.61  Aligned_cols=16  Identities=31%  Similarity=0.725  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHCCCEEE
Q ss_conf             9999999984054120
Q gi|254781045|r    9 LNLYMLTLFSHGCTQI   24 (162)
Q Consensus         9 ~~l~~~~l~laGCq~~   24 (162)
                      +.+.+++++|.||++.
T Consensus         4 l~~~~~~llL~~Cs~~   19 (200)
T pfam11873         4 LSLLLILLLLSGCSSQ   19 (200)
T ss_pred             EHHHHHHHHHHHCCCC
T ss_conf             0799999998415776


No 112
>PRK10397 hypothetical protein; Provisional
Probab=20.48  E-value=63  Score=13.52  Aligned_cols=30  Identities=13%  Similarity=0.247  Sum_probs=17.6

Q ss_pred             HHHHHHCCCEE-ECCCCCCCCCCCCCCCCCC
Q ss_conf             99998405412-0378877787666888743
Q gi|254781045|r   13 MLTLFSHGCTQ-IDFGNIFFKKPEISLPPSV   42 (162)
Q Consensus        13 ~~~l~laGCq~-~~~~~~~~~p~~a~p~~~V   42 (162)
                      ..+++|+||-. ..|+..--.|.||-..+-=
T Consensus         8 g~~l~LsGCa~v~nY~~vVk~PaPagl~GyW   38 (137)
T PRK10397          8 GALMLLAGCAEVENYNNVVKTPAPAGLAGYW   38 (137)
T ss_pred             HHHHHHHCCCCCCCHHHHHCCCCCCCCCEEE
T ss_conf             8999973532441066564489973323044


No 113
>TIGR00409 proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Prolyl-tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form, is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa.    This family includes the enzyme from Escherichia coli that contains all three of the conserved consensus motifs characteristic of class II aminoacyl-tRNA synthetases  and the enzyme from the spirochete Borrelia burgdorferi.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=20.29  E-value=60  Score=13.65  Aligned_cols=24  Identities=17%  Similarity=0.511  Sum_probs=18.7

Q ss_pred             HCCCCEEECCC---CEEEEECCCCCEE
Q ss_conf             00210033387---1899982899879
Q gi|254781045|r  113 ASLAAWNIIDE---DSFELKNKSGQTI  136 (162)
Q Consensus       113 ~~i~aW~v~G~---~vl~L~D~sG~~v  136 (162)
                      -.-+.||--|+   +.++|+|+.++..
T Consensus        84 ~~SGRW~~YG~seGELl~lkDR~~r~f  110 (620)
T TIGR00409        84 QESGRWDTYGPSEGELLRLKDRKGREF  110 (620)
T ss_pred             HHCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf             540753246865433667652688873


No 114
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=20.02  E-value=64  Score=13.46  Aligned_cols=15  Identities=13%  Similarity=0.206  Sum_probs=6.5

Q ss_pred             EECCCCEEEEECCCC
Q ss_conf             333871899982899
Q gi|254781045|r  119 NIIDEDSFELKNKSG  133 (162)
Q Consensus       119 ~v~G~~vl~L~D~sG  133 (162)
                      ||+||-+|+|.+..+
T Consensus        45 Dv~GKivvvl~ndP~   59 (142)
T cd04814          45 DVKGKVVVVLRNDPQ   59 (142)
T ss_pred             CCCCCEEEEEECCCC
T ss_conf             767978999807999


No 115
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02  E-value=60  Score=13.64  Aligned_cols=13  Identities=23%  Similarity=0.427  Sum_probs=9.4

Q ss_pred             HHHHHHHCCCEEE
Q ss_conf             9999984054120
Q gi|254781045|r   12 YMLTLFSHGCTQI   24 (162)
Q Consensus        12 ~~~~l~laGCq~~   24 (162)
                      .++.|+|+||-+-
T Consensus        11 ~v~lL~LagCaTa   23 (197)
T COG4764          11 AVVLLALAGCATA   23 (197)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999997030368


Done!