BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein
omp19 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781045|ref|YP_003065458.1| outer membrane lipoprotein omp19 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 162
Score = 337 bits (863), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60
MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD
Sbjct: 1 MHFYRFILLNLYMLTLFSHGCTQIDFGNIFFKKPEISLPPSVESEILLPPIPEEEFDQDD 60
Query: 61 ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120
ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI
Sbjct: 61 ISVPSKDNNAIRMGIIGAWKVSYRDVDCKMILTLTRFKKNFRGTARSCHGRLASLAAWNI 120
Query: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162
IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR
Sbjct: 121 IDEDSFELKNKSGQTIIVFYKTAEQSFEGSFQGESDKVIISR 162
>537021.9.peg.888_1
Length = 217
Score = 24.3 bits (51), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 125 SFELKNKSGQTIIVFYKTAEQSF 147
+ E+K SGQ+II F+K A F
Sbjct: 84 ALEIKLVSGQSIIEFWKQAPNPF 106
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 21.6 bits (44), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 110 GRLASLAAWNIIDEDS--------FELKNKSGQTIIVF 139
G+ S AWN I EDS F K G +I +F
Sbjct: 22 GKCDSCNAWNTIIEDSSRKESDQRFSKTIKQGHSISLF 59
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 21.2 bits (43), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 139 FYKTAEQSFEGSFQGESDKV 158
FYK FE + QG DK+
Sbjct: 483 FYKDNLSEFESNLQGNIDKL 502
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 21.2 bits (43), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 7 ILLNLYMLTLFSHGCTQIDFGN 28
I+L+ LFSHGC + N
Sbjct: 157 IILSRLFAALFSHGCIIVMTSN 178
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,227
Number of Sequences: 1233
Number of extensions: 4086
Number of successful extensions: 9
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)