Query         gi|254781046|ref|YP_003065459.1| hypothetical protein CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 41
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 23:43:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781046.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1wg8_A Predicted S-adenosylmet  18.5      27  0.0011   16.9   0.7   14   12-25    225-238 (285)
  2 1m6y_A S-adenosyl-methyltransf  17.8      27  0.0011   16.9   0.5   13   13-25    238-250 (301)
  3 3eja_A Protein GH61E; beta san   4.2 1.9E+02   0.008   12.7   0.5   21   12-33    132-152 (208)
  4 3bje_A Nucleoside phosphorylas   3.3   3E+02   0.013   11.8   1.8   24   14-37    139-162 (349)
  5 1n0w_B Breast cancer type 2 su   3.2 1.2E+02  0.0052   13.6  -1.1   17   16-32      3-19  (35)
  6 1l1q_A Adenine phosphoribosylt   3.0   2E+02  0.0084   12.6  -0.3   11   28-38     20-30  (186)
  7 1btq_A BAND 3 anion transport    2.7 3.1E+02   0.013   11.7   0.4   11    7-17      5-15  (26)
  8 2vtc_A CEL61B, cellulase; hydr   2.6 3.5E+02   0.015   11.5   0.6   21   12-33    174-194 (249)
  9 1nmo_A Hypothetical protein YB   2.2 3.6E+02   0.015   11.4   0.1   14   28-41     24-37  (247)
 10 3hj2_A Human neutrophil peptid   2.1 2.5E+02    0.01   12.2  -0.7    6   11-16     23-28  (33)

No 1  
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=18.53  E-value=27  Score=16.87  Aligned_cols=14  Identities=50%  Similarity=0.698  Sum_probs=11.2

Q ss_pred             HHCCEEEEEEECCC
Q ss_conf             61404578982133
Q gi|254781046|r   12 YMGRLTIIKFHSAT   25 (41)
Q Consensus        12 ymgrltiikfhsat   25 (41)
                      --||+.+|-|||--
T Consensus       225 ~gGrl~VISFHSLE  238 (285)
T 1wg8_A          225 PGGRLVVIAFHSLE  238 (285)
T ss_dssp             EEEEEEEEECSHHH
T ss_pred             CCCEEEEEECCCHH
T ss_conf             79679999717289


No 2  
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=17.76  E-value=27  Score=16.88  Aligned_cols=13  Identities=46%  Similarity=0.813  Sum_probs=10.5

Q ss_pred             HCCEEEEEEECCC
Q ss_conf             1404578982133
Q gi|254781046|r   13 MGRLTIIKFHSAT   25 (41)
Q Consensus        13 mgrltiikfhsat   25 (41)
                      -||+.+|-|||.-
T Consensus       238 gGrl~vISfHSLE  250 (301)
T 1m6y_A          238 GGRIVVISFHSLE  250 (301)
T ss_dssp             EEEEEEEESSHHH
T ss_pred             CCEEEEEECCCHH
T ss_conf             9689999638489


No 3  
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*
Probab=4.21  E-value=1.9e+02  Score=12.74  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=15.2

Q ss_pred             HHCCEEEEEEECCCCCCCCCCC
Q ss_conf             6140457898213340012023
Q gi|254781046|r   12 YMGRLTIIKFHSATGFKNGIQF   33 (41)
Q Consensus        12 ymgrltiikfhsatgfkngiqf   33 (41)
                      |+=|-.||-.|+|.. .+|-||
T Consensus       132 YLlR~E~IALH~A~~-~~gaQf  152 (208)
T 3eja_A          132 YLLRAEQIGLHVAQS-VGGAQF  152 (208)
T ss_dssp             EEEEEEEEECTTTTS-TTCCEE
T ss_pred             EEEEEEECCCCCCCC-CCCCCC
T ss_conf             388763034444566-898732


No 4  
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural genomics, medical structural genomics of pathogenic protozoa consortium; HET: R1P; 1.44A {Trypanosoma brucei}
Probab=3.32  E-value=3e+02  Score=11.77  Aligned_cols=24  Identities=8%  Similarity=0.093  Sum_probs=21.4

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             404578982133400120236610
Q gi|254781046|r   14 GRLTIIKFHSATGFKNGIQFGDTT   37 (41)
Q Consensus        14 grltiikfhsatgfkngiqfgdtt   37 (41)
                      |.++||..-++-|...+++.||.-
T Consensus       139 g~~~IIRiGTaGgl~~~v~vGDiV  162 (349)
T 3bje_A          139 STMKIIRLGTCGSPAESVPPLALA  162 (349)
T ss_dssp             GGCEEEEEEEEEECCTTSCTTCEE
T ss_pred             CCEEEEEEECCCCCCCCCCCCCEE
T ss_conf             861899986167777888889799


No 5  
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=3.24  E-value=1.2e+02  Score=13.64  Aligned_cols=17  Identities=41%  Similarity=0.591  Sum_probs=11.8

Q ss_pred             EEEEEEECCCCCCCCCC
Q ss_conf             45789821334001202
Q gi|254781046|r   16 LTIIKFHSATGFKNGIQ   32 (41)
Q Consensus        16 ltiikfhsatgfkngiq   32 (41)
                      .++.-||.|.|-|--|.
T Consensus         3 ~~~lgfhtasgkkvki~   19 (35)
T 1n0w_B            3 PTLLGFHTASGKKVKIA   19 (35)
T ss_dssp             CGGGSCEETTSCBCCCC
T ss_pred             CCEEEEECCCCCEEHHH
T ss_conf             62454441578430138


No 6  
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=3.01  E-value=2e+02  Score=12.63  Aligned_cols=11  Identities=36%  Similarity=0.752  Sum_probs=4.8

Q ss_pred             CCCCCCCCCCC
Q ss_conf             01202366100
Q gi|254781046|r   28 KNGIQFGDTTE   38 (41)
Q Consensus        28 kngiqfgdtte   38 (41)
                      +.||+|-|.+.
T Consensus        20 ~~Gi~F~Di~~   30 (186)
T 1l1q_A           20 TKGIAFKDLSD   30 (186)
T ss_dssp             STTCCEEECHH
T ss_pred             CCCCEEEECHH
T ss_conf             99941784824


No 7  
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=2.71  E-value=3.1e+02  Score=11.71  Aligned_cols=11  Identities=45%  Similarity=0.833  Sum_probs=7.6

Q ss_pred             HHHHHHHCCEE
Q ss_conf             99999614045
Q gi|254781046|r    7 RKIFIYMGRLT   17 (41)
Q Consensus         7 rkifiymgrlt   17 (41)
                      .-||||...|.
T Consensus         5 avifiyfaals   15 (26)
T 1btq_A            5 AVIFIYFAALS   15 (26)
T ss_pred             EEHHHHHHHCC
T ss_conf             30488898629


No 8  
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}
Probab=2.64  E-value=3.5e+02  Score=11.47  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=13.5

Q ss_pred             HHCCEEEEEEECCCCCCCCCCC
Q ss_conf             6140457898213340012023
Q gi|254781046|r   12 YMGRLTIIKFHSATGFKNGIQF   33 (41)
Q Consensus        12 ymgrltiikfhsatgfkngiqf   33 (41)
                      |+=|-.+|-.|+|... +|-||
T Consensus       174 YLlR~E~iaLH~a~~~-ggaQf  194 (249)
T 2vtc_A          174 YVFRHELLAAHGASSA-NGMQN  194 (249)
T ss_dssp             EEEEEEEEECTTTTST-TCCEE
T ss_pred             EEEEEEECCCCCCCCC-CCCCC
T ss_conf             7998852022345678-86423


No 9  
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=2.17  E-value=3.6e+02  Score=11.41  Aligned_cols=14  Identities=29%  Similarity=0.499  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             01202366100039
Q gi|254781046|r   28 KNGIQFGDTTEITK   41 (41)
Q Consensus        28 kngiqfgdtteitk   41 (41)
                      .||+|.|+..++.|
T Consensus        24 ~~GL~v~~~~~V~k   37 (247)
T 1nmo_A           24 PNGLQVEGKETVQK   37 (247)
T ss_dssp             CCEEEECCCSBCCE
T ss_pred             CCEEEECCCCCCCE
T ss_conf             87238678410698


No 10 
>3hj2_A Human neutrophil peptide 1; defensin, antimicrobial, chemotactic, cationic, Cys-rich, covalent dimer, synthetic, antibiotic, antiviral defense; 1.40A {Homo sapiens}
Probab=2.13  E-value=2.5e+02  Score=12.17  Aligned_cols=6  Identities=83%  Similarity=1.447  Sum_probs=0.0

Q ss_pred             HHHCCE
Q ss_conf             961404
Q gi|254781046|r   11 IYMGRL   16 (41)
Q Consensus        11 iymgrl   16 (41)
                      +|+||+
T Consensus        23 fy~grv   28 (33)
T 3hj2_A           23 IYQGRL   28 (33)
T ss_dssp             EETTEE
T ss_pred             EECCEE
T ss_conf             981568


Done!