Query gi|254781046|ref|YP_003065459.1| hypothetical protein CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 41 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:08:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781046.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2vapa2 d.79.2.1 (A:232-354) C 8.2 66 0.0048 13.8 1.3 20 15-38 101-120 (123) 2 d1quba5 g.18.1.1 (A:244-326) b 4.8 95 0.0069 13.0 0.6 18 20-37 17-34 (76) 3 d1nmpa_ c.135.1.1 (A:) Hypothe 3.4 1.2E+02 0.0086 12.6 0.1 12 29-40 25-36 (247) 4 d1ldja2 a.118.17.1 (A:17-410) 2.6 2.1E+02 0.016 11.3 0.9 23 3-26 114-136 (394) 5 d2cp6a1 b.34.10.1 (A:8-167) Re 2.5 2.2E+02 0.016 11.3 1.6 21 14-34 43-63 (160) 6 d2bv3a1 b.43.3.1 (A:283-403) E 2.4 2.2E+02 0.016 11.2 1.5 14 12-25 39-52 (121) 7 d1m6ya2 c.66.1.23 (A:2-114,A:2 2.3 2.3E+02 0.016 11.2 0.5 12 14-25 135-146 (192) 8 d1iwea_ c.37.1.10 (A:) Adenylo 2.1 2.5E+02 0.018 11.0 0.6 15 20-34 224-238 (430) 9 d1ybfa_ c.56.2.1 (A:) AMP nucl 2.1 2.5E+02 0.019 10.9 2.1 34 4-37 73-106 (246) 10 d1twfj_ a.4.11.1 (J:) RNA poly 2.1 1.4E+02 0.01 12.3 -0.9 11 2-12 53-63 (65) No 1 >d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=8.21 E-value=66 Score=13.82 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=13.9 Q ss_pred CEEEEEEECCCCCCCCCCCCCCCC Q ss_conf 045789821334001202366100 Q gi|254781046|r 15 RLTIIKFHSATGFKNGIQFGDTTE 38 (41) Q Consensus 15 rltiikfhsatgfkngiqfgdtte 38 (41) |.|+| ||||...+++.++.. T Consensus 101 ~VtiI----ATG~~~~~~~~~~~~ 120 (123) T d2vapa2 101 RVLLV----ITGVQSRIEFTDTGL 120 (123) T ss_dssp EEEEE----EECCGGGEEEETTEE T ss_pred EEEEE----EECCCCCCCCCCCCC T ss_conf 99999----955785444565554 No 2 >d1quba5 g.18.1.1 (A:244-326) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]} Probab=4.84 E-value=95 Score=13.04 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=12.8 Q ss_pred EEECCCCCCCCCCCCCCC Q ss_conf 982133400120236610 Q gi|254781046|r 20 KFHSATGFKNGIQFGDTT 37 (41) Q Consensus 20 kfhsatgfkngiqfgdtt 37 (41) |..-..-|+|||+.||+. T Consensus 17 k~~i~d~~~~~ilHGe~V 34 (76) T d1quba5 17 RVKIQEKFKNGMLHGDKV 34 (76) T ss_dssp EEEHHHHTTTCBCTTCEE T ss_pred EECHHHCCCCCCEECCEE T ss_conf 961135075761207778 No 3 >d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Probab=3.45 E-value=1.2e+02 Score=12.59 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=6.7 Q ss_pred CCCCCCCCCCCC Q ss_conf 120236610003 Q gi|254781046|r 29 NGIQFGDTTEIT 40 (41) Q Consensus 29 ngiqfgdtteit 40 (41) ||+|.|+..|++ T Consensus 25 ~GL~vg~~~~V~ 36 (247) T d1nmpa_ 25 NGLQVEGKETVQ 36 (247) T ss_dssp CEEEECCCSBCC T ss_pred CCEEECCCCCCC T ss_conf 853867965469 No 4 >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.57 E-value=2.1e+02 Score=11.32 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHCCEEEEEEECCCC Q ss_conf 899999999614045789821334 Q gi|254781046|r 3 VDLIRKIFIYMGRLTIIKFHSATG 26 (41) Q Consensus 3 vdlirkifiymgrltiikfhsatg 26 (41) +..++++|.||.|--+. -++..+ T Consensus 114 ~~~l~~if~YLdr~yv~-~~~~~~ 136 (394) T d1ldja2 114 SKVLNGICAYLNRHWVR-RECDEG 136 (394) T ss_dssp HHHHHHHTHHHHHHSSS-CCC--- T ss_pred HHHHHHHHHHHHHHHHH-HCCCCC T ss_conf 99999999886689988-604445 No 5 >d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.49 E-value=2.2e+02 Score=11.27 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.6 Q ss_pred CCEEEEEEECCCCCCCCCCCC Q ss_conf 404578982133400120236 Q gi|254781046|r 14 GRLTIIKFHSATGFKNGIQFG 34 (41) Q Consensus 14 grltiikfhsatgfkngiqfg 34 (41) ++.-+++|--.+.|++|+-.| T Consensus 43 ~~~G~vr~iG~~~~~~G~wvG 63 (160) T d2cp6a1 43 TKAGVVRFLGETDFAKGEWCG 63 (160) T ss_dssp TEEEEEEEEEECSSSSSEEEE T ss_pred CCEEEEEEECCCCCCCCCEEE T ss_conf 971899983556887887898 No 6 >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Probab=2.41 E-value=2.2e+02 Score=11.21 Aligned_cols=14 Identities=57% Similarity=0.904 Sum_probs=10.6 Q ss_pred HHCCEEEEEEECCC Q ss_conf 61404578982133 Q gi|254781046|r 12 YMGRLTIIKFHSAT 25 (41) Q Consensus 12 ymgrltiikfhsat 25 (41) |.||+++.+.+|.+ T Consensus 39 ~~G~i~~~RV~sG~ 52 (121) T d2bv3a1 39 YVGRLTFIRVYSGT 52 (121) T ss_dssp TTEEEEEEEEEESE T ss_pred CCCEEEEEEECCCC T ss_conf 88867751211255 No 7 >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Probab=2.31 E-value=2.3e+02 Score=11.20 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=7.4 Q ss_pred CCEEEEEEECCC Q ss_conf 404578982133 Q gi|254781046|r 14 GRLTIIKFHSAT 25 (41) Q Consensus 14 grltiikfhsat 25 (41) |++.+|-|||.. T Consensus 135 G~l~ii~f~s~E 146 (192) T d1m6ya2 135 GRIVVISFHSLE 146 (192) T ss_dssp EEEEEEESSHHH T ss_pred CEEEEECCCCHH T ss_conf 746201034477 No 8 >d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse (Mus musculus) [TaxId: 10090]} Probab=2.08 E-value=2.5e+02 Score=10.96 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=5.8 Q ss_pred EEECCCCCCCCCCCC Q ss_conf 982133400120236 Q gi|254781046|r 20 KFHSATGFKNGIQFG 34 (41) Q Consensus 20 kfhsatgfkngiqfg 34 (41) -|..|.|+---+.+| T Consensus 224 LfEGAQG~lLDid~G 238 (430) T d1iwea_ 224 LVEGANAALLDIDFG 238 (430) T ss_dssp EEECCSCGGGCTTTS T ss_pred EEEECCEEEEECCCC T ss_conf 874023025531346 No 9 >d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=2.06 E-value=2.5e+02 Score=10.95 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=25.7 Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCC Q ss_conf 9999999961404578982133400120236610 Q gi|254781046|r 4 DLIRKIFIYMGRLTIIKFHSATGFKNGIQFGDTT 37 (41) Q Consensus 4 dlirkifiymgrltiikfhsatgfkngiqfgdtt 37 (41) ..+-...+..|--+||..-++-|.++.++.||.- T Consensus 73 a~~~~~L~~~~~~~iI~iGt~GgL~~~~~vGDvV 106 (246) T d1ybfa_ 73 ATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYL 106 (246) T ss_dssp HHHHHHTTTTCCSEEEEEEEECCSSCTTCTTCEE T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEE T ss_conf 9999999973998899954601247888789789 No 10 >d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.06 E-value=1.4e+02 Score=12.27 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=0.0 Q ss_pred CHHHHHHHHHH Q ss_conf 68999999996 Q gi|254781046|r 2 NVDLIRKIFIY 12 (41) Q Consensus 2 nvdlirkifiy 12 (41) +||+|.++.-| T Consensus 53 hvdlid~l~~y 63 (65) T d1twfj_ 53 HVDLIEKFLRY 63 (65) T ss_dssp BCCTHHHHHTC T ss_pred HHHHHHHHHCC T ss_conf 89999986667 Done!