RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781046|ref|YP_003065459.1| hypothetical protein
CLIBASIA_04740 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>gnl|CDD|179781 PRK04200, PRK04200, cofactor-independent phosphoglycerate mutase;
           Provisional.
          Length = 395

 Score = 31.0 bits (71), Expect = 0.071
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 3   VDLIRKIFIYMGRLTIIKFHSATGF 27
           VDL++ I IY G L +I+   ATG+
Sbjct: 242 VDLLKGIGIYAG-LDVIEVPGATGY 265


>gnl|CDD|162906 TIGR02535, hyp_Hser_kinase, proposed homoserine kinase.  The
           proposal that this family encodes a kinase is based on
           analogy to phosphomutases which are intramolecular
           phosphotransferases. A mutase active site could evolve
           to bring together homoserine and a phosphate donor such
           as phosphoenolpyruvate resulting in a kinase activity.
          Length = 396

 Score = 28.9 bits (65), Expect = 0.26
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 3   VDLIRKIFIYMGRLTIIKFHSATGFKN 29
           VDL++ I IY G L  I+   ATG+ +
Sbjct: 243 VDLLKGIGIYAG-LERIEVEGATGYLD 268


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.145    0.418 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 638,281
Number of extensions: 21503
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 4
Length of query: 41
Length of database: 5,994,473
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,670,353
Effective search space: 147429178
Effective search space used: 147429178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)