HHsearch alignment for GI: 254781047 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=97.00 E-value=0.0055 Score=38.99 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=50.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 6499888887728999999998578111------4688899999999999999--7131122466557807899999961
Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404)
Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404)
T Consensus 201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~sLDl~~L~AGtkyRGe-------FEeRlk~il~ei~~ 269 (823)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLV----LTLDIGLLLAGTKYRGE-------FEERIKKIMDEIKK 269 (823)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH
T ss_conf 88502379998799999999997608899868759936----88428877533422267-------99999999999985
Q ss_pred CCC-EEEEEEEEEC---CCH-HHHHHHHHHHHHHHCC-CEEEEE
Q ss_conf 387-9998423204---713-5888999999998549-689981
Q gi|254781047|r 139 ESR-VLCFDEFMIT---NIA-DAIILSRLFAALFSHG-CIIVMT 176 (404)
Q Consensus 139 ~~~-lLCfDEF~V~---Dia-DAmil~rl~~~lf~~g-v~lV~T 176 (404)
T Consensus 270 ~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA 313 (823)
T CHL00095 270 ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA 313 (823)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 79869997351653288976664317887657864898669970