HHsearch alignment for GI: 254781047 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.10 E-value=0.0093 Score=37.56 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH
Q ss_conf 6668864998-888877289999999985781--11468889999999999999971311----2246655780789999
Q gi|254781047|r 62 KYCSMQGIYL-HGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404)
Q Consensus 62 ~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404)
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek--HsVSrLIGaPPGYVGyeeGG------~LTE 587 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK--HSVSRLIGAPPGYVGYEEGG------QLTE 587 (786)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH--HHHHHHHCCCCCCCEECCCC------CHHH
T ss_conf 999873578866788656999999999996599744455456877778--77998727999872006554------0037
Q ss_pred HHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHHHHCC
Q ss_conf 99613-87999842320471358889999999985--------------4968998178686775238
Q gi|254781047|r 135 SIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPENLYKD 187 (404)
Q Consensus 135 ~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~dLY~~ 187 (404)
T Consensus 588 aVRr~PySViLlDEIEKAHp---dV~nilLQVl-DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 588 AVRRKPYSVILLDEIEKAHP---DVFNLLLQVL-DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred HHHCCCCEEEEECHHHHCCH---HHHHHHHHHH-CCCCEECCCCCEEECCEEEEEEECCCCHHHHHHH
T ss_conf 66069986888412644088---9999999984-6780554899888430028998450265989753