HHsearch alignment for GI: 254781047 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.99 E-value=0.00016 Score=48.76 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC
Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999999613--87
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR 141 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~ 141 (404)
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-IrvvgSEl---Vq----KYiGEG---a-----RlVRelF~lArekaPs 246 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATF-IRVVGSEL---VQ----KYIGEG---A-----RLVRELFELAREKAPS 246 (406)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-EEECCHHH---HH----HHHCCC---H-----HHHHHHHHHHHHCCCE
T ss_conf 9997127668999758899999872058669-99421999---99----983411---6-----9999999987414984
Q ss_pred EEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCHHH------HHH
Q ss_conf 999842320--------471358889999999985-------496899817868----6775238740566------898
Q gi|254781047|r 142 VLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINRNV------LVS 196 (404)
Q Consensus 142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR~~------FlP 196 (404)
T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred EEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHH
T ss_conf 99983112231111368888509999999999986058897887689985588555576650887545301168989789
Q ss_pred HHHHHHHCCEEEECCCCCHHHHC
Q ss_conf 99999850508980473112211
Q gi|254781047|r 197 FIELLEKKLEIISLDSGQDYRRK 219 (404)
Q Consensus 197 fI~~lk~~~~V~~l~~~~DYR~~ 219 (404)
T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~l 349 (406)
T COG1222 327 RAEILKIHTRKMNLADDVDLELL 349 (406)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999987621467667699999