HHsearch alignment for GI: 254781047 and conserved domain: PRK05022

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=95.08  E-value=0.088  Score=31.37  Aligned_cols=120  Identities=17%  Similarity=0.126  Sum_probs=67.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             68864998888877289999999985781114688899-----9999999999997-13112246655780789999996
Q gi|254781047|r   64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIA  137 (404)
Q Consensus        64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~  137 (404)
T Consensus       207 ~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l--~EseLFGh~kGaFtGA-~~~r~G~--f--e~A  279 (510)
T PRK05022        207 ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL--AESELFGHVKGAFTGA-ISNRSGK--F--ELA  279 (510)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH--HHHHHCCCCCCCCCCC-CCCCCCC--E--EEC
T ss_conf             8999889889898139999999996688789985788899998567--8998659777886886-5567881--0--177


Q ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             1387999842320471358889999999985-------------49689981786867752387405668
Q gi|254781047|r  138 LESRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL  194 (404)
Q Consensus       138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F  194 (404)
T Consensus       280 ~g-GTLfLDEI~~--Lpl~~-Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~DL  345 (510)
T PRK05022        280 DG-GTLFLDEIGE--LPLAL-QAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRADL  345 (510)
T ss_pred             CC-CEEEEECHHH--CCHHH-HHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHHH
T ss_conf             89-8798757454--99999-9999999847958855899466666899960783599998839638999