HHsearch alignment for GI: 254781047 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=99.03 E-value=3.8e-09 Score=78.14 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=100.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404)
Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404)
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~-~~G~~v~f~~~-~~L~~~L~~a~~---------~~~~~~~l~r~l~~~dLLI 168 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA-ADLLLQLSTAQR---------QGRYKTTLQRGVMAPRLLI 168 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-HHHHHHHHHHHH---------CCCHHHHHHHHHCCCCEEE
T ss_conf 588679989999868999999999999-87993999789-999999999987---------6859999998743465144
Q ss_pred EEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHH-HHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf 8423--20471358889999999985496899817868677523874056-68989999985050898047311221123
Q gi|254781047|r 145 FDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRN-VLVSFIELLEKKLEIISLDSGQDYRRKEQ 221 (404)
Q Consensus 145 fDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~-~FlPfI~~lk~~~~V~~l~~~~DYR~~~~ 221 (404)
T Consensus 169 iDdlG~~~~~~~~~~~lfeli~~Rye~~-S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~-GeSyR~k~~ 246 (258)
T PRK09183 169 IDEIGYLPFSQEEANLFFQVIAKRYEKG-AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK 246 (258)
T ss_pred EHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHH
T ss_conf 3133154688889999999999985767-78998899978985651686999999999860461799745-877237658
Q ss_pred CCCC
Q ss_conf 6783
Q gi|254781047|r 222 SILP 225 (404)
Q Consensus 222 ~~~~ 225 (404)
T Consensus 247 ~k~~ 250 (258)
T PRK09183 247 RKAG 250 (258)
T ss_pred HHCC
T ss_conf 7557