HHsearch alignment for GI: 254781047 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=99.03  E-value=3.8e-09  Score=78.14  Aligned_cols=148  Identities=16%  Similarity=0.224  Sum_probs=100.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             88649988888772899999999857811146888999999999999997131122466557807899999961387999
Q gi|254781047|r   65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC  144 (404)
Q Consensus        65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC  144 (404)
T Consensus       100 ~~~Nvil~G~~GtGKThLA~Alg~~A~-~~G~~v~f~~~-~~L~~~L~~a~~---------~~~~~~~l~r~l~~~dLLI  168 (258)
T PRK09183        100 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA-ADLLLQLSTAQR---------QGRYKTTLQRGVMAPRLLI  168 (258)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-HHHHHHHHHHHH---------CCCHHHHHHHHHCCCCEEE
T ss_conf             588679989999868999999999999-87993999789-999999999987---------6859999998743465144


Q ss_pred             EEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHH-HHHHHHHHHHHCCEEEECCCCCHHHHCCC
Q ss_conf             8423--20471358889999999985496899817868677523874056-68989999985050898047311221123
Q gi|254781047|r  145 FDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRN-VLVSFIELLEKKLEIISLDSGQDYRRKEQ  221 (404)
Q Consensus       145 fDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~-~FlPfI~~lk~~~~V~~l~~~~DYR~~~~  221 (404)
T Consensus       169 iDdlG~~~~~~~~~~~lfeli~~Rye~~-S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~-GeSyR~k~~  246 (258)
T PRK09183        169 IDEIGYLPFSQEEANLFFQVIAKRYEKG-AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK  246 (258)
T ss_pred             EHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHH
T ss_conf             3133154688889999999999985767-78998899978985651686999999999860461799745-877237658


Q ss_pred             CCCC
Q ss_conf             6783
Q gi|254781047|r  222 SILP  225 (404)
Q Consensus       222 ~~~~  225 (404)
T Consensus       247 ~k~~  250 (258)
T PRK09183        247 RKAG  250 (258)
T ss_pred             HHCC
T ss_conf             7557