HHsearch alignment for GI: 254781047 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=94.19 E-value=0.32 Score=27.81 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHCC
Q ss_conf 68864998888877289999999985781114688899--999-9999999997131122466-5578078999999613
Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEI-LESDPIPLVASSIALE 139 (404)
Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~-~~~dpl~~va~~l~~~ 139 (404)
T Consensus 160 ~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~------~~A~ 233 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF------VEAD 233 (441)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE------EECC
T ss_conf 8899489989998109999999996578778980798789898455589861775568789653468987------7889
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHHH
Q ss_conf 87999842320471358889999999985-------------496899817868677523874056689
Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVLV 195 (404)
Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404)
T Consensus 234 gGTLfLdeI~~l~~~---~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy 299 (441)
T PRK10365 234 GGTLFLDEIGDISPM---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCEECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf 982550231529999---999999877752100058873441363799837889999988198258999